Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00093 ATGTCAGAAGGTGCAGAAATTGACGAGCGAGTGGACCTTGATGAAGAAAATTTCATGGAAGAGATCGATGATGATGTTGAAGAACAAATAGATGACGATGGAGTTGATGGAGGTGAAGATGAAAACGCTGAAGGTAGTGTTGAGGAACATGAATACGAGGACTCAACAGCAGAGGTTGGTGGGAAGGACCAATTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGAGATGATGATCAAAAACCGTCATTCATTGATGAAGATGAGAAAGAGAAGCATGACGAACTTCTTGCCCTTCCACCTCATGGTTCCGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGATGGGTGACATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGTGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATCGAGGAGATACATAGCAGGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTGGAAAATATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTATATTACAATAATGCATGTGCTGATTATTCTCGGCAAAAGATGTCAAATGCAAGCTTTAAGCTGGATGGCAATACACCCACTGTCACATGGGCAGATCCAAAGAACTCTCCTGATCATTCGGCTTCTTCACAGGGTTTGATTGGATTGGACATGTATCCCTTCTTCCCTTCCTTGCTATCGTTTCCTCCTCTTCCTTCTCACACTGAAGAACCCAATTTTATGGGTATTTTCAAGAATGTGAATTTGGAGAGAATTTCACGAGTGCTCAGTTGTAAGAAAGGGGCAGTCACTTGTGAGGGGAAACACTTGGCAAAGAATAGTTCTTCTGTTAAAGCTCTGTACGTCAAGAACATACCAGAGAATGTTACCACCGAACAACTGAAGGAACTATTCCGTCGCCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGAAAACGCGATTTTGGCTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACTGAGAAATATGAAATTGATGGACAAGTTCTTGAAGTTGTTCTTGCGAAGCCTCAAGCTGATAAAAAACCAGATGGAGGGTACGGCTACAATCCTGGACTGCATCCAAACCATCTTCCTCATCCTGCGTATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATACGGTGTTGGGGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTACAACAACCTGGTGTACAAGCGCCACCCAGCCGACCTCGCAGAAGTGACCGGAGTAATGGTCCAAGTGGGCAGCCTGGGCGAGGAGGTGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1641 0.4375 MSEGAEIDERVDLDEENFMEEIDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSTAEVGGKDQLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSNASFKLDGNTPTVTWADPKNSPDHSASSQGLIGLDMYPFFPSLLSFPPLPSHTEEPNFMGIFKNVNLERISRVLSCKKGAVTCEGKHLAKNSSSVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQADKKPDGGYGYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRSDRSNGPSGQPGRGGGSGNDEGNRSRRYRPY 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00093 546 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 531 - -
Vimu10g00093 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 423 IPR000504 GO:0003723
Vimu10g00093 546 SMART rrm1_1 187 264 IPR000504 GO:0003723
Vimu10g00093 546 SMART rrm1_1 347 419 IPR000504 GO:0003723
Vimu10g00093 546 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vimu10g00093 546 Gene3D - 330 472 IPR012677 -
Vimu10g00093 546 MobiDBLite consensus disorder prediction 8 48 - -
Vimu10g00093 546 MobiDBLite consensus disorder prediction 1 86 - -
Vimu10g00093 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Vimu10g00093 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Vimu10g00093 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 416 IPR000504 GO:0003723
Vimu10g00093 546 Gene3D - 9 186 IPR012677 -
Vimu10g00093 546 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Vimu10g00093 546 SUPERFAMILY RNA-binding domain, RBD 101 185 IPR035979 GO:0003676
Vimu10g00093 546 Gene3D - 187 267 IPR012677 -
Vimu10g00093 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Vimu10g00093 546 SUPERFAMILY RNA-binding domain, RBD 340 438 IPR035979 GO:0003676
Vimu10g00093 546 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Vimu10g00093 546 MobiDBLite consensus disorder prediction 49 86 - -
Vimu10g00093 546 CDD RRM_SF 108 180 - -
Vimu10g00093 546 MobiDBLite consensus disorder prediction 513 527 - -
Vimu10g00093 546 MobiDBLite consensus disorder prediction 502 546 - -
Vimu10g00093 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vimu10g00093 546 SUPERFAMILY RNA-binding domain, RBD 184 272 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00093 Vimu-Chr10 535429 540838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00093 106 497 Eukaryotic Initiation Factors Gene Family AT3G16380 19.417 3.29e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00093 K13161 - qsa:O6P43_027427 665.611