Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00084 ATGTCTGTCGGCGAAACTGCTTGTTCATACGCATCTATCATCCTTCACGATGAAGGAATCGCCGTCACTGCCGACAATATCACCACTTTGTTGAAAACTGCCAAGGTTAAAGTCGAATCTTACTGGCCTACCTTGTTTGCTAAACTTGCCGAGAAGAAAAATCTTGGCGATTTGATTGCAAATGCTGCAGGCGGTGGGGCACCAGTCGCTGTTGCAGCTGCCCCAGTTGCTGCCGCAGGTGGAGGTGCAGCTGCGGCCGCCCCTGCCGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGACGATGATATGGGATTCGGCTTGTTCGACTAG 339 0.5133 MSVGETACSYASIILHDEGIAVTADNITTLLKTAKVKVESYWPTLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPVAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00084 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Vimu10g00084 112 CDD Ribosomal_P1 5 111 - -
Vimu10g00084 112 MobiDBLite consensus disorder prediction 97 112 - -
Vimu10g00084 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Vimu10g00084 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vimu10g00084 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vimu10g00084 112 MobiDBLite consensus disorder prediction 85 112 - -
Vimu10g00084 112 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00084 Vimu-Chr10 478070 479034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00084 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.140 1.15e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00084 K02942 - gmx:100791962 134.42