Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00079 ATGGCACCTAATACCATTTTCTTGCTCTCCTACACATCTTCCTCCTTACCCATAACCTTATTCAACCACCATCTCCATACCCAATTTAGATCTTCCCACAAATCATTCGTTTCCTTTTCCAAGGCTACGGCTTTCTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAGAAAACGCGGAGGAAGAAACGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGTACAACATCTACTTCATATGTTCAACCCTCATGGACCCGTACTCTCTGCTCAGGTTTGCCGCAGTGAGGAGACCGGTGAGAGTAGAGGAAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAAAAAGGCAATTGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCGGCTGAGATGAATCCCAAGAGGAGGAAGAATCTTGACACGATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATACCTGAAGACCTGAGACAGCTTTTTGGTAGATTTGGTAATGTGACCAGTGTAAGAGTGTTGCAAGATACGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGAAATGCTGCACTATCTCTCAATGGAACGGTGCTTTGTGGTCGAACACTGGTGATTAGAGAGCGTGTAAAGAGAGAGGAATAA 786 0.4593 MAPNTIFLLSYTSSSLPITLFNHHLHTQFRSSHKSFVSFSKATAFSFTASAATVDKARVVHGGENAEEETFKQPRPTEVYICNLPRSCDVQHLLHMFNPHGPVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIEALDASDVGGREVLVRFSAEMNPKRRKNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTIPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVLCGRTLVIRERVKREE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00079 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Vimu10g00079 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Vimu10g00079 261 SUPERFAMILY RNA-binding domain, RBD 70 164 IPR035979 GO:0003676
Vimu10g00079 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Vimu10g00079 261 SMART rrm1_1 78 151 IPR000504 GO:0003723
Vimu10g00079 261 SMART rrm1_1 182 254 IPR000504 GO:0003723
Vimu10g00079 261 SUPERFAMILY RNA-binding domain, RBD 176 259 IPR035979 GO:0003676
Vimu10g00079 261 Gene3D - 173 261 IPR012677 -
Vimu10g00079 261 Gene3D - 49 168 IPR012677 -
Vimu10g00079 261 PANTHER OS02G0815200 PROTEIN 19 255 - -
Vimu10g00079 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00079 Vimu-Chr10 464493 465734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00079 64 261 Eukaryotic Initiation Factors Gene Family AT1G22760 30.244 2.30e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00079 - - pvu:PHAVU_009G258000g 433.721