Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00076 ATGGGAGAAGTGGCGGGTGAGAAGGGTGTGATGCAGACTCAGGAGGAACAGAGCAACAATGCCTCCATGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTTCGGGTTTTGCTTGTGGAAGCTGATGATTCTACTCGACAGATCATTGCTGCGCTTCTCCTTGCCACAGCTTGTGATGGCCTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCATTGAACTTGGTTTTGCTGCAGAAAATCATGCTGCTAGCAGTGATTCTAGCGGTTCTGTGGCTTCTACACCAAAAAATAATGAATGCAGCGAGAAAACAAGTGAGGTTCAAGATGTTTCACAGCTGAAGAGTTCTTCAAATTTGAGCGATGGCACAATTAAGCATGACAACTCTACAAAATGTGAAAGGGAATCAGATAAGCATAATGACAAAGCTGGAGGTGCGCAATTACAATTAGCATGTATTGCAGCCAAATCAATATTTATATCAGAAGATGAAGGGTGCAACAAAACTTTTAAACCAACAGGCTTAAGGCCAGGTCAAGGATATGATTTCGGTGGAATAAGAAATCAAGATGAATTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGCAATTAGTGTTGATATTCGTGGATGCAGTGATGAATTGGAAGGTCCGTCTACTGGGGCCATTGACTTGATTGGTACATTCAATACACTTCCAGAGAGCACTGATGAAAAATGTAGTGTCAGTAGTGGTAACGTTTCCAAGTTTGACTTTGATACACAACTGGAACTTTCTATAAGAAGATATTTTCCTGGAGGCTCGTACAAAGCTGTATTTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCCTTTGTCCAACACCATCAACTATCTCTGCAAAATTAACAAACGTTAGTCATGATTCTCAGAAATCTCCTAATTTATTTGAAAATGCAACTACTTCTCATCATTGTGGTGAAAAAGATCAAATTAAGGAGAAAATCACCACTCCAGATATTGGTCAATCTGGACAAGTTGATCCAAAATTACCGAACAGTCAACTTGGATTCTTTCCTGCTAAGGGGGTTACTTATGATCACAAATCAACTGGAAATGGAAATGTCTTCTCTTCTATGCTTTATTCTCAATCAGGTGTCCATACCATATGGACTCCAAAATCATTGTTCCAGAAAGAGAGTTCTCCGTTTCCCACTAGTACTTCCTCCCAGTCTAATCCTCAGAGTCGCAACTCAAAACATCATCACTGCTCTGACGATGCAACCCATGATTCAATTCAAAATGTAAATGACCAAAGCCATTTGCATTTTGAGACACAGGACTCTCCTGCTGCTAGTCAGACTGCTGATACTGCCCTTTACCATGATACAACAAATCATAATTGTAGTGGTGTATACAGAAGCATAGGCTGCACAAGTGATGGAAATACTACTTCAGCCAAGGTAGCCAAGGACAACCACGAAAGTTTCACCGATATTGGTCACTTCAGTCATGATGGATTCATAGGGACAGATTCTCATCGCACCAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAGGACAGATGCTATGAGAAAAAGGTACGGTATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTAGACAGTAGTCATCCGGTATCAGATCTGGGTGGTGATTCCTGA 1992 0.4162 MGEVAGEKGVMQTQEEQSNNASMVRWERFLPRMVLRVLLVEADDSTRQIIAALLLATACDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFRCMLKGAADFLIKPVRKNELRNLWQHVWRRHVIELGFAAENHAASSDSSGSVASTPKNNECSEKTSEVQDVSQLKSSSNLSDGTIKHDNSTKCERESDKHNDKAGGAQLQLACIAAKSIFISEDEGCNKTFKPTGLRPGQGYDFGGIRNQDEFLRIELSKANPAISVDIRGCSDELEGPSTGAIDLIGTFNTLPESTDEKCSVSSGNVSKFDFDTQLELSIRRYFPGGSYKAVFEERQILNHSNASAFSRYGSSKLLQPLCPTPSTISAKLTNVSHDSQKSPNLFENATTSHHCGEKDQIKEKITTPDIGQSGQVDPKLPNSQLGFFPAKGVTYDHKSTGNGNVFSSMLYSQSGVHTIWTPKSLFQKESSPFPTSTSSQSNPQSRNSKHHHCSDDATHDSIQNVNDQSHLHFETQDSPAASQTADTALYHDTTNHNCSGVYRSIGCTSDGNTTSAKVAKDNHESFTDIGHFSHDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVDSSHPVSDLGGDS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00076 663 MobiDBLite consensus disorder prediction 164 221 - -
Vimu10g00076 663 MobiDBLite consensus disorder prediction 632 663 - -
Vimu10g00076 663 ProSiteProfiles Response regulatory domain profile. 36 148 IPR001789 GO:0000160
Vimu10g00076 663 SUPERFAMILY CheY-like 35 155 IPR011006 -
Vimu10g00076 663 MobiDBLite consensus disorder prediction 164 206 - -
Vimu10g00076 663 Pfam CCT motif 607 649 IPR010402 GO:0005515
Vimu10g00076 663 SMART REC_2 35 144 IPR001789 GO:0000160
Vimu10g00076 663 ProSiteProfiles CCT domain profile. 607 649 IPR010402 GO:0005515
Vimu10g00076 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 383 IPR045279 GO:0009736
Vimu10g00076 663 MobiDBLite consensus disorder prediction 488 520 - -
Vimu10g00076 663 Pfam Response regulator receiver domain 43 142 IPR001789 GO:0000160
Vimu10g00076 663 MobiDBLite consensus disorder prediction 207 221 - -
Vimu10g00076 663 MobiDBLite consensus disorder prediction 488 506 - -
Vimu10g00076 663 Gene3D - 33 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00076 Vimu-Chr10 449974 455969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00076 606 654 Response Regulator Gene Family AT5G24470 85.714 5.91e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vimu10g00076 Response_reg 2.8e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00076 K12130 - gmx:100779346 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00076 10 449974 455969 Vimu9g00021 9 208413 214173 PCT