Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00074 ATGGCTGAAATGTTAGAATCAAGTAGAAAAGCTGTGAGTGGGAGAGAGGAGTATCTTAAAAGGGAAGAAGAAGAAGAAGAAGATGATGAGTTGGCGTTTTGCATGGAAAAGACGGTTGCTTTTGTGGTTCCAATGGCTTTGAAAACATTGTCTGAGCTGAGGGTGTTTGATATCTTAGCCAAAGGAGGCAAACTCTGTGCGAAAGAGATCGCAGTTGAGATAGGAAGCAAGAACCCTGAAGCTCCTGCAATGTTGGATCGTCTTCTCAGCCTTTTGGTGAGTCACTCTCTGCTATCTTGTTCCATCTCTCAACAAGAACCACACCCTCAGAAGTTCTACACCCTCTCTCCTGCTTCCAAATACTTTGTCACTGATCCTCAAGGTTTATCATTGGGATCCTCTGTCAAATTACTTCTGGACGACATCTTCTTGAAAAGCTGGGGCGAACTGAAAGGAGCAATCCTAGAAGGGGGTGTGGCATTCGACAGGGCCCATGGCATGCATGCCTTCGAATATCCACGTGTGGATCCTAGGTTTAACGAGGTTTTCAACAATGGTATGATAGGCCTCACCACTGTAATTATGAAGAGGATTCTTGAGTTATACAACGGTTTTGAGCATGTCACAAGGCTCGTCGACGTTGGTGGAGGTTATGGAGTCAACATCAAATTGATCAAATCCAAACACCCTCACATTCAGGCTATTAACTTTGACTTGCCTCATGTGGTGGAAAATGCCCCTCTCCATTCAGGTGTGGAGCATGTGGGAGGAGACATGTTTGAAAGCGTTCCTTCAGGAGATGCGATTTTTATGAAGTGGGTACTTCATGATTGGAGTGATGAACATTGCGTGAAGGTGTTGAAGAATTGCTACAAAGGGATTCCTGATGATGGAAAGGTTATTGTGGTGGACTCAATTGTGTCGACGGTGCCGGAGAGAAGTGTTACTGCTAAGGGTGCTTTGGGATCTGATCTTATAATGATGACTCAAAACCCAGGAGGGAAAGAACGAACACGGCAACAAATCATAGAATTGGCAGAAGCATCTGGGTTTAGTGGGATCAGATTCATATGCTCTGTATGTGGGAACTGGGTTATGGAGTTCTACAAGTAA 1113 0.4465 MAEMLESSRKAVSGREEYLKREEEEEEDDELAFCMEKTVAFVVPMALKTLSELRVFDILAKGGKLCAKEIAVEIGSKNPEAPAMLDRLLSLLVSHSLLSCSISQQEPHPQKFYTLSPASKYFVTDPQGLSLGSSVKLLLDDIFLKSWGELKGAILEGGVAFDRAHGMHAFEYPRVDPRFNEVFNNGMIGLTTVIMKRILELYNGFEHVTRLVDVGGGYGVNIKLIKSKHPHIQAINFDLPHVVENAPLHSGVEHVGGDMFESVPSGDAIFMKWVLHDWSDEHCVKVLKNCYKGIPDDGKVIVVDSIVSTVPERSVTAKGALGSDLIMMTQNPGGKERTRQQIIELAEASGFSGIRFICSVCGNWVMEFYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00074 370 FunFam Caffeic acid 3-O-methyltransferase 13 122 - -
Vimu10g00074 370 FunFam Caffeic acid O-methyltransferase 123 370 - -
Vimu10g00074 370 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Vimu10g00074 370 Gene3D Vaccinia Virus protein VP39 124 370 IPR029063 -
Vimu10g00074 370 Gene3D - 11 122 IPR036388 -
Vimu10g00074 370 Pfam Dimerisation domain 45 93 IPR012967 GO:0046983
Vimu10g00074 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 370 IPR016461 GO:0008168
Vimu10g00074 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 369 IPR029063 -
Vimu10g00074 370 PIRSF O-mtase 12 370 IPR016461 GO:0008168
Vimu10g00074 370 PANTHER O-METHYLTRANSFERASE 40 368 IPR016461 GO:0008168
Vimu10g00074 370 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g00074 370 SUPERFAMILY "Winged helix" DNA-binding domain 26 125 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00074 Vimu-Chr10 442317 444166 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00074 28 370 Monolignol Biosynthesis Gene Families AT5G54160 52.023 1.82e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00074 K13066 - vun:114162418 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00074 10 442317 444166 Vimu9g00015 9 157262 159717 PCT