Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00072 ATGGGGAGTGAGCTGAAAGATGCAATTCGGGAGGGGGGTATTCCATTCAACAGGGTCTATGGCACCCATGCTTTTGAGTATCCAAGGTTGGACTCAAGGTTCAATAGAGTTTTCAACACAGCTATGATCAATCACACGACTTTGGTGATGAAGAGGGTTCTGGAAACCTACAAAGGTTTTGAGGGGATAAAAAGGCTGGTGGATGTTGGTGGTGGTCTTGGGGTCAACATTAACATGATCACTTCAAAATACCCTCATATCCATGGCATCAATTTCGACTTACCTCATGTCATTCAAGATGCTCCTTCCTATCCTGGTATCATCCTGAAAAAAGAAATTGTTCTTTTCCTTCTTTTAAACACTGTTGTTATTCGGTCAAATTTGAGTTTTACTAGGCAGTAA 402 0.4154 MGSELKDAIREGGIPFNRVYGTHAFEYPRLDSRFNRVFNTAMINHTTLVMKRVLETYKGFEGIKRLVDVGGGLGVNINMITSKYPHIHGINFDLPHVIQDAPSYPGIILKKEIVLFLLLNTVVIRSNLSFTRQ 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00072 133 PANTHER O-METHYLTRANSFERASE 5 104 IPR016461 GO:0008168
Vimu10g00072 133 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 107 IPR029063 -
Vimu10g00072 133 Gene3D Vaccinia Virus protein VP39 35 107 IPR029063 -
Vimu10g00072 133 Gene3D - 17 53 IPR036388 -
Vimu10g00072 133 Pfam O-methyltransferase domain 4 104 IPR001077 GO:0008171
Vimu10g00072 133 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 133 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00072 Vimu-Chr10 435872 436830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00072 5 107 Monolignol Biosynthesis Gene Families AT5G54160 67.961 1.64e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00072 K13066 - gmx:100803633 197.208