Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00066 ATGCTCACAAGCTTGGCCACGCTCGCTCAGCACAACCTCCAATGTATTATTCTGATACGAACTGTGCCCCATTCCTCAGACCAATCGTCTCCTCCTTCTCCAACTTCTATGCCTTCTTCACAATACCCATTACCTCCCCGATTTCGCCACGTCTTCATCAAATCTTCATCTCTCTCATTCCATCAATCATTCACTTTTACAACATACATACATACATACATACACACACTACACTCATATTCATTAAATTACAGACTAACTACACTTCCACTCCACTCACTTCTCTTCTTCCTTACAATGTCACCTATTCTTCTCCTCACTTTTCTTCTACTTCTTCTGTGCTTCCCATTTTCTTTCTCTTTGCCTCCAAACTCCTGCACTGAAACATGTGGGGACCTCCATCTTCCTTTTCCATTCTATGTCAACTCTTCTTGTCATTCAATTTCCACTGCTTTCCATCTCTCCTGCACAAATTCATCTACCCTTTTCCTCAGAATTGGCTCGGTGAGCTACAGAGTCTTGGAGTTCTTCCCGGATGGCGTGCTGGTGGACTTTCCCGGCTCGTCATCTTGTAGACAGTACAACGACTTGAATTCTTTTGACAGAAGCTTTGCAGGGAAGGACAGCTTTGGAGTTTCGGTGGACAATGTTATTGGTCTCTATGACTGTGAGGATTCCTCTCTGTGTAAAGCAGATTGTGAAACTATTGACTTGCCTGGTTGTGATGGAAGGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCCGACCATACCATATGGCATGTTGGATATGGATTTTCGGTGTTTTCTCAGTTTGGATGCAGGGGGGTTTCTAGTTGGGCCGTTTTGCGAGGCTCAACTTGGGGAAAACGTGGGGTCAAGTTGGAATGGGCACTGCCCAGAAACTCCTCGTACCAAGTTTGTGCAAGGAATGCTGACATGATCAATGCTACAGCAATCGAAGGAGGAGTCAGATGTGTCTGTCAAAATGGATATATTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGACGGAAAGGAAGCATATGGAAGTGACTGCAACATCAAAAGACAAGATCAGAGGAAATTTGTTATCATTGCCGGAATCATTGGCCCAGTTCTGATCGTTGCCTCCCTGGTTGCATTATTTTATCTTCTTAAAAGGCCAGCAAAACCAGGGATGTTTGACACGGAGCAGGCTTACTATCAAAACATTTCAATCCCCAAAGCTTGTAAAACTCGACTGTTCAGCCTCCACGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGGTCAAAAACTTATGCATGACAATAATGGGACAATTTTCGCTGGAGTTTTGAGGGATGGATCTCACATAACTGTCCACAAATTACTATGTGAGAAGAAAGACTTAATTCAAGTTCTGTCACATATCGAGGTTCTGTCCTCTATTGTGCATAGAAACATGGCCCGCATTCTTGGTTGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTTTCCTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAAGAACTACGTTTAGATTGGTACAGGAGATTGACTATCGCTGCAGAAACAGCTAGCATTCTTTCATTCCTACACTACGAGAACTCTCCTCCCATATTTCACCACAACCTTAAATCTGCATGCATCTTCCTTGATGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGCTCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACCACGAAGGCTTTGGCATCTGCAAAAATGATGTCTATGACATGGGTGTGTTGCTTCTTGAAATCATCTCAGGCTCAAATCGCTTGGATTTACCAAGTTCAGCCTTGCAGCATATAAGGGCTGGAAAATTTGAAGAAATATTTGACCCTTTTCTTTGCTATGATGAACAACCACAGTATCGGCAAGAGCAAATGCAGATCATTGCTGATCTTGCGACAAGATGCCTCTTATTTGGTGTTGATGGAAGGCTGGGAATGGTTGATGTTGTGAGGGAGTTAGTACACTTGACTAAAGAAAGTCTTGATGGAGGAATTAGCAAAGGAGCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 2187 0.4326 MLTSLATLAQHNLQCIILIRTVPHSSDQSSPPSPTSMPSSQYPLPPRFRHVFIKSSSLSFHQSFTFTTYIHTYIHTLHSYSLNYRLTTLPLHSLLFFLTMSPILLLTFLLLLLCFPFSFSLPPNSCTETCGDLHLPFPFYVNSSCHSISTAFHLSCTNSSTLFLRIGSVSYRVLEFFPDGVLVDFPGSSSCRQYNDLNSFDRSFAGKDSFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGRGGGSLACCYPLSDHTIWHVGYGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSYQVCARNADMINATAIEGGVRCVCQNGYIGDGFANGTGCLQACIKDGKEAYGSDCNIKRQDQRKFVIIAGIIGPVLIVASLVALFYLLKRPAKPGMFDTEQAYYQNISIPKACKTRLFSLHELEEATKGFEEGQKLMHDNNGTIFAGVLRDGSHITVHKLLCEKKDLIQVLSHIEVLSSIVHRNMARILGCCIESGNTLVVYEFPSNGTLEEHLHQSKGQELRLDWYRRLTIAAETASILSFLHYENSPPIFHHNLKSACIFLDDDYSVKIAGFGLLNSNFYYGSHLHKNHEGFGICKNDVYDMGVLLLEIISGSNRLDLPSSALQHIRAGKFEEIFDPFLCYDEQPQYRQEQMQIIADLATRCLLFGVDGRLGMVDVVRELVHLTKESLDGGISKGAALEETFSNSSLLQMISMSPDSMNVP 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00066 728 Gene3D Laminin 307 340 - -
Vimu10g00066 728 Pfam Wall-associated receptor kinase galacturonan-binding 126 176 IPR025287 GO:0030247
Vimu10g00066 728 Gene3D Transferase(Phosphotransferase) domain 1 511 595 - -
Vimu10g00066 728 SUPERFAMILY Protein kinase-like (PK-like) 417 687 IPR011009 -
Vimu10g00066 728 Gene3D Transferase(Phosphotransferase) domain 1 596 696 - -
Vimu10g00066 728 ProSiteProfiles Protein kinase domain profile. 435 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00066 728 FunFam Putative WAK-related receptor-like protein kinase family protein 511 701 - -
Vimu10g00066 728 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 122 690 IPR045274 GO:0007166
Vimu10g00066 728 FunFam probably inactive receptor-like protein kinase At2g46850 407 509 - -
Vimu10g00066 728 Pfam Protein tyrosine and serine/threonine kinase 438 585 IPR001245 GO:0004672|GO:0006468
Vimu10g00066 728 Gene3D Phosphorylase Kinase; domain 1 402 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00066 Vimu-Chr10 399688 402244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00066 104 690 Receptor kinase-like Gene Family AT2G23450 29.134 1.08e-56 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu10g00066 PK_Tyr_Ser-Thr 3.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00066 - - vra:106760020 1249.57