Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00063 ATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCTGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACTCCCAAAGAGAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTAGTGTCTCCAGCCAAGTAGATTGTGCAATTAAAATTCGCAATCTTGAGAGTAAGTTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTCGAGTATGACAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTTTATGGTGTTTCTGAAAGAACTGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTACGCTCTTGGTGAACTGGGACAATGGTGTGCATTCAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTTTCTCTACTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATACTGATATTGATGACTTGGAGAATGGTGCGGCTCAAAGTGTTTCGGAGCATGAAGAGATGGAAGAAGGGGAACTTCCAGACAGTCATGTTGTTTCTGGCGGAGAGCACGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATAAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTTTCTGCATTAGTTCTGCCGAAGGTCTTTGCGGAGCTTCCATCTCTTAATTTTGTTAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGAACCCACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGGCGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATTCGGCAATGCAATGTTGTTATTCGTTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCCAGGGGGCGTGCTAGAAAACCTGGATCTGATTACATCCTGATGGTGGAGAGGTACTGGTTGTCACAGTTTTAG 1263 0.4315 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGSVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNTDIDDLENGAAQSVSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLNFVKCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERYWLSQF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00063 420 Gene3D - 276 418 IPR027417 -
Vimu10g00063 420 FunFam Endoribonuclease dicer-like 1 276 419 - -
Vimu10g00063 420 SMART helicmild6 318 404 IPR001650 -
Vimu10g00063 420 PANTHER DICER-RELATED 1 415 - -
Vimu10g00063 420 Pfam Helicase conserved C-terminal domain 285 402 IPR001650 -
Vimu10g00063 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 420 IPR001650 -
Vimu10g00063 420 CDD SF2_C_dicer 282 412 - -
Vimu10g00063 420 Gene3D - 1 133 IPR027417 -
Vimu10g00063 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00063 Vimu-Chr10 386602 389179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00063 301 406 Eukaryotic Initiation Factors Gene Family AT5G11170 33.333 2.05e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00063 K11592 - gmx:100811631 765.377