Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00060 ATGGACTTGATACAACAAGTTAAAGGTACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGACGGCAATTTGCAAGGCGGAGGAGGAGGAGGAGGAGGAGGACCGGTTCATCATCATCATCATCACCATCATCACCAGCAGCAGCAGCAGCAGCAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCGAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACAGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACTGATCATGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGCTCACGGTGCTGCCACTTCCGCTGCCGCCGCCGCCGCCGCCCATCATCAAAACAACTATGGCGAGCATAATTCGGGATCTGGGACCGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGATTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCATGGTGGCATGTCGAGTGGCGGAGGTAGTTCTACAACAAGTAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCTTGTCTTTGGGTTCGGCAGCGCATGTCACAGTGGGCAATTCACTTCCTTCTTCTTCGTCACTACAGCAACGGTTGAGGATGCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAACCGGGACTTCTCTGCTGTTTGATTTGGATCCTTCCTTGCAGTATCATCAGTAG 1404 0.5171 MDLIQQVKGTYSDSREEEEEEEVTEIIGITREAESSRLHHQDAASNFGKKLDLMELSLGSSKEEEGDGNLQGGGGGGGGGPVHHHHHHHHHQQQQQQQHEHHHHHDGHGTCSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHGHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHAHGAATSAAAAAAAHHQNNYGEHNSGSGTGSLYYLRSSMPMGGGADQNLAGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMSSGGGSSTTSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVTVGNSLPSSSSLQQRLRMPHEDPLSSSARFGDHKGGTGTSLLFDLDPSLQYHQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00060 467 ProSiteProfiles B3 DNA-binding domain profile. 124 229 IPR003340 GO:0003677
Vimu10g00060 467 SUPERFAMILY DNA-binding pseudobarrel domain 121 226 IPR015300 -
Vimu10g00060 467 CDD B3_DNA 122 211 IPR003340 GO:0003677
Vimu10g00060 467 Gene3D - 117 234 IPR015300 -
Vimu10g00060 467 Pfam B3 DNA binding domain 124 228 IPR003340 GO:0003677
Vimu10g00060 467 SMART B3_2 124 229 IPR003340 GO:0003677
Vimu10g00060 467 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g00060 467 MobiDBLite consensus disorder prediction 365 384 - -
Vimu10g00060 467 FunFam B3 domain-containing protein 117 237 - -
Vimu10g00060 467 MobiDBLite consensus disorder prediction 418 467 - -
Vimu10g00060 467 MobiDBLite consensus disorder prediction 81 98 - -
Vimu10g00060 467 MobiDBLite consensus disorder prediction 60 111 - -
Vimu10g00060 467 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 86 404 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00060 Vimu-Chr10 359568 361178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00060 114 400 RAV Transcription Factor Family AT2G46870 50.859 1.65e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu10g00060 B3 4.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00060 K09287 - gmx:100812161 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00060 10 359568 361178 Vimu9g00008 9 43735 45420 PCT