Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00058 TTAATGGCTTCTGCTTGTGCCTCCTCTGCCATTGCTGCTGTTTCCATCTCCACGCCAAGGCAAGTTTCTCCATTTTCCCATTATCTGCAAATATATTTATTTATGTCATTTCATTCTGTGCATAAGATGTTGCACATATTCATCAAATTAATATTGGTGAACTTGTACAGTTCCCAGAAGAATGGATCAGTGTTGGGAACACCCAAAGCTTCTTTTCTTGGTGGAAGGAAATTGAGGGTGAACAAATACACAGCAGCAGTTGGAGGACGATCCACCACTACAGTGTGTGCCGTAGCAGACCCTGACAGGCCCCTATGGTTTCCCGGCAGCACCCCTCCTCCATGGCTTGACGGCAGTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGTCTTGGATCTGATCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGGATTTTCATTCCAGAATTCCTGACAAAGATTGGTGTTTTAAACACACCCTCATGGTACACAGCTGGAGAACTTGAATACTTCACAGACACCACTACCCTCTTCATTGTTGAGCTCTTTTTCATTGGGTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGGTGTGTGAACACTGACCCCATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCCCTTGGATGGGGAAGTGGTTCTCCCGAGAAGATCAAGGAATTGAGAACTAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTGATGGGTGCATGGTTCCAGCACATATACACTGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGTAAGCTTATTCACCCACTCTGCCTTCGATTATATATTGCCCATTTCTTTATGCTCTGACCTTATCTTTCTTTCACCATCACTGCAGGCTTTCACCCCTAAGTGA 1014 0.4734 LMASACASSAIAAVSISTPRQVSPFSHYLQIYLFMSFHSVHKMLHIFIKLILVNLYSSQKNGSVLGTPKASFLGGRKLRVNKYTAAVGGRSTTTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAVSLFTHSAFDYILPISLCSDLIFLSPSLQAFTPK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00058 337 Gene3D Chlorophyll a/b binding protein domain 113 298 - -
Vimu10g00058 337 Pfam Chlorophyll A-B binding protein 112 278 IPR022796 -
Vimu10g00058 337 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 95 304 IPR001344 GO:0009765|GO:0016020
Vimu10g00058 337 SUPERFAMILY Chlorophyll a-b binding protein 99 304 - -
Vimu10g00058 337 FunFam Chlorophyll a-b binding protein, chloroplastic 113 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00058 Vimu-Chr10 346199 347451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00058 90 304 Chloroplast and Mitochondria Gene Families AT3G61470 89.352 4.49e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00058 K08908 - gmx:100784089 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00058 10 346199 347451 Vimu11g03181 11 51168103 51168576 PCT