Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00053 ATGATTGTGAGCTCCACTTTCACACGTTATGTATGGCATGGCAATGGCAATGGCAATGGCATAGTTGTGAATGATGATGATGACGATGATAGAGAAATTCCACTGAGACACTACCGGCCGCCCCTCCCAACCCAACCTCAGAACAAAACTTCCACTCCCAGAGACACACCAACCCCATCAACATCAACAACAACGTCAACACCAACCTCTTCCATCTACATGATTCCCAACTTAATGGTCTTTTTCATTCTCCTGTTTCTTCTTCTCTCTGCCTTCCTTCTTCCTGTTCAAGCCGCCTCCTGTAACCAACTTGATAGAGACTCACTCTTGGCCTTCTCCAGGAACATATCCACTCCTTCTCCTCTCAATTGGTCTGTTTCTGTTGATTGTTGTCTCTGGGAAGGCATTAAGTGTGATGAAAATTTCAGAGTCATACATCTATTGCTACCATCCAGGGGTCTCGCTGGCTTCATCTTCCCATCACTCACAAATCTCACTGCTCTCTCCCTTCTTGATCTATCCCAGAACCGCTTATCCGGTTATCTCCCAGACCAATTTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACCCTTTGTTGCTAAGACCAGTGGCAATACCATTCGGGAGCTTGATCTGTCCAGTAATTTATTCCACGGAAAACTACCACTCTCTCTCCTTCAGCACCTGGCAGATGCAATCGCAGCAGGGAGTTTGACATCTTTTAACGTTAGTAACAACAGCTTCACTGGTCAAATTCCCACTTCTCTCCTCTGCAATAACCACAGTAGCTCATCCTCTCTTAGGTTCTTGGATTATTCCTCCAATGATTTCTCTGGCATGATTCAGCCAGGACTAGGAGCATGTTCCAAGCTGGAGAGATTTCGAGCAGGCTCCAATTCCCTATCCGGGCCCCTTCCTGGTGATATTTTCGATGCTGTTTCTCTCAAAGAAATCTCTTTGCCCCTCAATAAACTCGGTGGAACCCTTGGTGAGAGCATTGTTAACCTTGTCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACCGGCCCCATTCCCTCTGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTTCTTCATGCCAACAAAATAAATGGCACTCTGCCCCCATCTCTAATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGCTCAATTTGTTGGAGGGAAGCCTCTCGGCATTGAATTTCTCCGGACTCCTCAGACTCTCAGCACTTGACCTCGGCAACAATAGTTTTACTGGTATTATACCACCAACCATGTATGCATGCAAATCCCTTAAAGCTGTAAGACTTGCATCTAATTATTTTGAGGGACAGATCTCACCTGATATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAACCTCAGTAATGTCACAGGAGCTCTGAGGCTGCTTATGGGACTCAAGAACCTTAGCACTCTCATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGTCAACATAACAGACCCAGATGGATTCCAAAAGATCCAAGTTCTAGGTTTGGGCGGTTGTAATTTCACAGGCCAAATACCACACTGGCTTTATAATCTGAAGAAGCTCGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGCACACGCTTCCCGAGCTTTTCTACGTAGACTTGTCTTTTAACCTCCTCACAGGAATGTTTCCAGCTGAGCTCACAACGCTTCCAGCACTAACATCACAACGGACCTATGACGAAGTAGAAAGGACTTACCTGGAGTTACCCGTGTTTGCTAATGCCAACAATGTCTCTCAGATGCAATACAATCAGATTTCCAACCTACCACCAGCAATATATTTGGGAAACAATAGCCTCAACGGCAGTATCCCGGTAGAGATTGGCAAACTCAGAGTCCTTCATCAGCTGGACCTTAGTAACAACAACTTCTCTGGCAATATCCCAGCGGAAATTTCTAACCTGATTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTTTCCGGGGAAATTCCCGTTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTGAAGGACCGGTACCCACAGGTGGCCAATTTGATACTTTCTCCTTTTCTAGCTTCGAAGGAAACCCACAGTTGTGTGGGTCAGTTGTTCGGCGGTCTTGTCTTCCTCAACAGGGTACTACTGCTCGTAGTCACAGCTCAAGCAAAAAGCTGATAATTGGATTTGCCATTGCAGCCAGTTTTGGCCTTGTTTCCTTCGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGGAGGATCAATCCAGGTGGAGAACCTGACAAGATTGAAGCAGAATCAATTTCTATCAACTCTTACAGTGGGGTTCATCCCGAGGTTGACAAAGAGGCCAGCCAAGTGGTACTGTTCCCTAATAAAACAAGTGAAATCAAGGACCTTACCATAGTTGAAATATTAAAAGCTACAGAAAACTTCAGTCAGGCAAACATAATAGGATGTGGAGGTTTTGGTTTGGTGTATAAAGCAACATTACCAAATGGAACTGCTCTGGCAATCAAGAAACTTTCAGGAGAATTAGGTCTAATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAGAATCTGGTTGCATTGCAAGGCTACTGTGTGCATGAGGGTGTTCGGCTTCTGATATACACTTACATGGAAAATGGAAGTCTGGATCACTGGCTACATGAGAAGGCAGATGGTCCATCTCAGATTGACTGGCCTACCCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCACCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTTCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGGCCAGACTCATTCTTCCTTATCACACTCACGTTACAACTGAACTTGTAGGCACATTAGGTTACATACCCCCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGACGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTAACGGGGAGGAGACCTGTTGATGTAAGCAAGCCAAAAATGTCAAGGGAGTTAGTTGCCTGGGTTCAACAAATGCGGAGTGAAGGAAAACAAGATCAAGTCTTTGATCCATTTCTGAGAGGCAAGGGCTTTGAAGAAGAGATGCTTAAGGTTCTTGATGTAGCCTGCATGTGTGTCAGCCATAATCCTTTCAAGAGACCCTGCATCCCAGAAGTTGTTGAATGGCTGAGGAATGTACGATTATCCAACCACCATATGAATAAAGACTAA 3420 0.4427 MIVSSTFTRYVWHGNGNGNGIVVNDDDDDDREIPLRHYRPPLPTQPQNKTSTPRDTPTPSTSTTTSTPTSSIYMIPNLMVFFILLFLLLSAFLLPVQAASCNQLDRDSLLAFSRNISTPSPLNWSVSVDCCLWEGIKCDENFRVIHLLLPSRGLAGFIFPSLTNLTALSLLDLSQNRLSGYLPDQFFSLLNHLQILDLSYNRLSGELPPFVAKTSGNTIRELDLSSNLFHGKLPLSLLQHLADAIAAGSLTSFNVSNNSFTGQIPTSLLCNNHSSSSSLRFLDYSSNDFSGMIQPGLGACSKLERFRAGSNSLSGPLPGDIFDAVSLKEISLPLNKLGGTLGESIVNLVNLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANKINGTLPPSLMDCVNLVMLDVRLNLLEGSLSALNFSGLLRLSALDLGNNSFTGIIPPTMYACKSLKAVRLASNYFEGQISPDILGLQSLAFLSISTNNLSNVTGALRLLMGLKNLSTLMLSQNFFNEMMPDDVNITDPDGFQKIQVLGLGGCNFTGQIPHWLYNLKKLEVLDLSYNQISGSIPPWLHTLPELFYVDLSFNLLTGMFPAELTTLPALTSQRTYDEVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPVEIGKLRVLHQLDLSNNNFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLEGPVPTGGQFDTFSFSSFEGNPQLCGSVVRRSCLPQQGTTARSHSSSKKLIIGFAIAASFGLVSFVSVLIVWVISKRRINPGGEPDKIEAESISINSYSGVHPEVDKEASQVVLFPNKTSEIKDLTIVEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGELGLMEREFKAEVEALSTAQHENLVALQGYCVHEGVRLLIYTYMENGSLDHWLHEKADGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVAWVQQMRSEGKQDQVFDPFLRGKGFEEEMLKVLDVACMCVSHNPFKRPCIPEVVEWLRNVRLSNHHMNKD 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00053 1139 MobiDBLite consensus disorder prediction 21 67 - -
Vimu10g00053 1139 MobiDBLite consensus disorder prediction 43 67 - -
Vimu10g00053 1139 Gene3D Ribonuclease Inhibitor 322 417 IPR032675 -
Vimu10g00053 1139 PRINTS Leucine-rich repeat signature 190 203 - -
Vimu10g00053 1139 PRINTS Leucine-rich repeat signature 168 181 - -
Vimu10g00053 1139 ProSitePatterns Protein kinases ATP-binding region signature. 861 884 IPR017441 GO:0005524
Vimu10g00053 1139 FunFam Receptor-like protein 2 103 220 - -
Vimu10g00053 1139 SUPERFAMILY L domain-like 281 740 - -
Vimu10g00053 1139 PANTHER LEUCINE RICH REPEAT KINASE 2 310 1130 - -
Vimu10g00053 1139 FunFam Tyrosine-sulfated glycopeptide receptor 1 418 756 - -
Vimu10g00053 1139 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Vimu10g00053 1139 SUPERFAMILY L domain-like 124 361 - -
Vimu10g00053 1139 Gene3D Ribonuclease Inhibitor 102 244 IPR032675 -
Vimu10g00053 1139 ProSiteProfiles Leucine-rich repeat profile. 550 573 IPR001611 GO:0005515
Vimu10g00053 1139 ProSiteProfiles Leucine-rich repeat profile. 683 705 IPR001611 GO:0005515
Vimu10g00053 1139 Gene3D Ribonuclease Inhibitor 246 321 IPR032675 -
Vimu10g00053 1139 Gene3D Phosphorylase Kinase; domain 1 817 930 - -
Vimu10g00053 1139 Pfam Leucine rich repeat N-terminal domain 105 139 IPR013210 -
Vimu10g00053 1139 FunFam Leucine-rich repeat receptor-like protein kinase 931 1137 - -
Vimu10g00053 1139 Gene3D Ribonuclease Inhibitor 418 758 IPR032675 -
Vimu10g00053 1139 Pfam Leucine Rich Repeat 683 705 IPR001611 GO:0005515
Vimu10g00053 1139 Gene3D Transferase(Phosphotransferase) domain 1 931 1139 - -
Vimu10g00053 1139 SMART LRR_typ_2 681 705 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 165 189 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 421 445 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 372 396 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 190 214 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 548 572 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 495 518 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 348 371 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 469 491 IPR003591 -
Vimu10g00053 1139 SMART LRR_typ_2 657 680 IPR003591 -
Vimu10g00053 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Vimu10g00053 1139 ProSiteProfiles Protein kinase domain profile. 855 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00053 1139 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 318 413 - -
Vimu10g00053 1139 Pfam Protein kinase domain 856 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00053 1139 SMART serkin_6 855 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00053 1139 FunFam Leucine-rich repeat receptor protein kinase MSP1 820 930 - -
Vimu10g00053 1139 SUPERFAMILY Protein kinase-like (PK-like) 834 1126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00053 Vimu-Chr10 328281 331981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00053 79 789 Miscellaneous Gene Families AT1G17240 51.385 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu10g00053 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00053 - - gmx:100782574 1839.7