Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00049 ATGGGAGACAAACAGAGAATGGAAAGTGCTTCCCAGTTGCAGCAGCCAGTGAAACACGATCCTAGGGTTTCAGTGTTGGAAAGTAGCATTGCATCGTTGCTTGCTTACCCTTCTGCAACTGCCAACCAACACCATAACATGGCTGAGGAACTGGATAAACCGTTGCTTGATCCTGAGAATTTCAACCGAGATGGCATTGATTTGGAGCGTATACCATTAGAAGAAGTATTTGAACAGTTGAGAACATCACGAAGAGGACTTTCATCTGATGATGCCGAAGCTCGAATAGAGATATTTGGCCCAAACAAACTTGAAGAGAAGAAAGAGAATAAAATATTGAAATTTCTTGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCAGCAGCACTGATGGCGATTATCCTTGCTAATGGTGGAGGGGAAGGTCCTGATTGGCAAGACTTTATAGGGATTATATGCCTACTGGTAATTAACTCAACTATTAGTTTTATAGAAGAAAATAATGCAGGTAATGCTGCAGCGGCATTAATGGCACGTTTAGCTCCTAAAACAAGGGTTCTCAGAGACGGGCAGTGGCAAGAGCAAGATGCAGCAATTTTAGTACCTGGGGATATAATTAGCATAAAATTGGGAGATATAGTTCCAGCTGATGCTCGCTTGCTAGAAGGGGATCCTCTAAAAATTGATCAGTCAGCCCTTACTGGAGAGTCTCTACCTGTCACGAAAAGAACTGGTGACGAGGTCTTTTCCGGTTCAACATGTAAACATGGAGAGATTGAGGCTGTAGTGATAGCAACAGGAGTTCACTCCTTTTTTGGAAAGGCAGCATACCTGGTTGATAGTACTGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATAATTTTTGAAATAATTATAATGTTCCCAGTGGAGCATCGATCATACAGGGATGGAATCAACAATCTTCTTGTTCTCCTAATTGGAGGAATACCCATCGCTATGCCAACAGTCTTATCTGTAACACTTGCAATTGGCTCTCACCGTCTTTCTCAGCAGGGAGCCATAACTAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTGCTCTGCAGTGACAAAACTGGAACTCTTACACTGAATCGCCTGACTGTTGATAAAAACCTTATTGAGGTTTTTAATAGAAATATGGACAAAGATACGGTTGTTCTACTAGCAGCCAGAGCAGCTAGGCTGGAAAACCAGGATGCCATTGATACTGCCGTAGTTAATATGCTAGCTGATCCAAAAGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCTGTAGATAAACGTACAGCTATAACGTATATTGATTCTGATGGCAATTTTTATCGGGCCACTAAAGGAGCTCCGGAACAGATTCTAGATTTGTGTCAAGAGAAAGACCAAATTGCCAGAAAAGTGCACGATATAATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGAATTTTTGTGGCTTGTTGCCTTTGTTTGATCCACCAAGACATGATAGTGCGGAAACCATCCGAAGAGCACTTAACCTTGGAGTCTGTGTAAAGATGATTACAGGTGATCAATTAGCCATTGCAAAGGAGACAGGCCGAAGACTTGGCATGGGAACAAACATGTACCCTTCTTCATCTTTGTTAGGGCATGAAAAAGAAGAGCATGAAGCTCTCCCTGTAGATGAGCTCGTTGAAATGGCAGATGGATTTGCTGGTGTTTATCCTGAACACAAGTATGAAATAGTGAAAATTTTACAAGAAAAGAAACATGTTGTTGGGATGACCGGGGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGACGCTACAGATGCTGCAAGAAGTGCTGCTGATTTGGTCTTAACCGAGCCTGGGTTAAGTGTCATTGTTAGTGCTGTGTTAACAAGCAGAGCTATATTCCAAAGAATGAAAAATTATACAGTTGAGTGTATATATGCTGTCTCCATCACCATAAGGATAGTGGTTGGTTTTACTCTCCTGGCATTAATTTGGGAGTATGATTTTCCACCATTCATGGTCTTGATCATTGCAATACTAAATGATGGTACTATCATGACCATATCTAAAGACAGAGTGAAGCCATCCCCGACACCCGACAGTTGGAAGCTGCCAGAGATATTTGCAACAGGAATAGTGATTGGAACTTATCTTGCTCTGGTCACTGTCCTATTCTATTGGGCAATAGTTGAGACCACTTTCTTTGAGACCCACTTCCATGTAACCTCCTTATCTAGTGACAGCGAGAAAGTTTCATCAGCTGTATATCTGCAAGTTAGCATCATTAGCCAGGCTCTAATCTTTGTTACTAGAAGCTATGGATGGTCATTTCTAGAGAGACCCGGAGCTCTGCTGATGTGCGCCTTTGTAATAGCTCAACTGGTGGCGACCTTAATTGCTGTGTATGCAAATATGAGTTTTGCAAAGATTAGCGGAATTGGATGGGAATGGGCTGGTGTTATATGGTTATACAGTTTGATCTTCTATGTACCATTGGACATCATTAAGTTCACAGTGCGTTATGCCTTGACTGGAGATGCCTGGAAACTCCTATTTGAAAGAAAGACTGCTTTTACTTCAAAGAAAGACTATGGAAAAGAAGATAGGGCTGCAAAGTGGGTTCTTTCTCAGAGGACTCTACAAGGACTGCATCTCATGGCCGCCGGAGGCCTGGAAGTAAACGGAAGACGCTCTTCTATCATAGCTGAACAGGCCAGACGACGAGCTGAAATAGCCAGGCTGGGTGAGTTGCACACTCTCAGAGGACATGTTGAGTCTGTTGTCAGACTCAAAAACTTAAACCGCAATATCCAATCAGCTCATACAGTCTGA 3006 0.4232 MGDKQRMESASQLQQPVKHDPRVSVLESSIASLLAYPSATANQHHNMAEELDKPLLDPENFNRDGIDLERIPLEEVFEQLRTSRRGLSSDDAEARIEIFGPNKLEEKKENKILKFLGFMWNPLSWVMEAAALMAIILANGGGEGPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMARLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDSTEVVGHFQKVLTSIGNFCICSIAIGIIFEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDKNLIEVFNRNMDKDTVVLLAARAARLENQDAIDTAVVNMLADPKEARANITEVHFLPFNPVDKRTAITYIDSDGNFYRATKGAPEQILDLCQEKDQIARKVHDIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWNFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGHEKEEHEALPVDELVEMADGFAGVYPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTVECIYAVSITIRIVVGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAIVETTFFETHFHVTSLSSDSEKVSSAVYLQVSIISQALIFVTRSYGWSFLERPGALLMCAFVIAQLVATLIAVYANMSFAKISGIGWEWAGVIWLYSLIFYVPLDIIKFTVRYALTGDAWKLLFERKTAFTSKKDYGKEDRAAKWVLSQRTLQGLHLMAAGGLEVNGRRSSIIAEQARRRAEIARLGELHTLRGHVESVVRLKNLNRNIQSAHTV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00049 1001 NCBIfam HAD-IC family P-type ATPase 614 722 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 NCBIfam HAD-IC family P-type ATPase 153 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 SUPERFAMILY Calcium ATPase, transduction domain A 184 280 IPR008250 -
Vimu10g00049 1001 FunFam Plasma membrane ATPase 393 540 - -
Vimu10g00049 1001 PRINTS H+-transporting ATPase (proton pump) signature 611 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 PRINTS H+-transporting ATPase (proton pump) signature 639 655 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 PRINTS H+-transporting ATPase (proton pump) signature 497 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 PRINTS H+-transporting ATPase (proton pump) signature 814 835 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 PRINTS H+-transporting ATPase (proton pump) signature 670 695 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00049 1001 Pfam E1-E2 ATPase 182 360 - -
Vimu10g00049 1001 Gene3D - 393 540 IPR023299 GO:0000166
Vimu10g00049 1001 NCBIfam plasma-membrane proton-efflux P-type ATPase 86 860 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g00049 1001 SFLD p-type atpase 363 691 IPR044492 -
Vimu10g00049 1001 SUPERFAMILY HAD-like 377 686 IPR036412 -
Vimu10g00049 1001 Pfam haloacid dehalogenase-like hydrolase 377 653 - -
Vimu10g00049 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 66 900 IPR023298 -
Vimu10g00049 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Vimu10g00049 1001 FunFam Plasma membrane ATPase 533 687 - -
Vimu10g00049 1001 SMART Cation_ATPase_N_a_2 67 139 IPR004014 -
Vimu10g00049 1001 SFLD Haloacid Dehalogenase 363 691 - -
Vimu10g00049 1001 FunFam Plasma membrane ATPase 184 268 - -
Vimu10g00049 1001 Gene3D - 954 1001 - -
Vimu10g00049 1001 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g00049 1001 CDD P-type_ATPase_H 86 895 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g00049 1001 Pfam Cation transporter/ATPase, N-terminus 71 133 IPR004014 -
Vimu10g00049 1001 Gene3D - 378 676 IPR023214 -
Vimu10g00049 1001 FunFam ATPase 4 plasma membrane-type 627 869 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 557 567 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 639 658 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 231 245 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 662 674 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Vimu10g00049 1001 PRINTS P-type cation-transporting ATPase superfamily signature 535 546 - -
Vimu10g00049 1001 Gene3D - 146 869 - -
Vimu10g00049 1001 PANTHER CALCIUM-TRANSPORTING ATPASE 69 937 - -
Vimu10g00049 1001 Gene3D - 184 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00049 Vimu-Chr10 314571 322924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00049 47 1001 Primary Pumps ATPases AT1G17260 80.544 0.0 1546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00049 K01535 - gmx:100795836 1637.47