Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00047 ATGGCGATGATCCATGTGGGCAACCTTGGAAAGGCATTTCTTGCTCAGGCAACCGTGTTACAGAGATGTATGTTATCTAATCTTGGACTGACTGGGTCGTTGCCTTATGGATTAGAAAGCTTGACATCTTTGAGAACCCTAGACATGAGTGGCAACAGTCTTGGCGGCAGCATACCATACCAGCTCCCTCCATATGTGCAGCGATTAAATCTTGCTTATAATAACATCACAGGGACTGTTCCTTACTCTATTTCAAACTTGACAGCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGCTGTTAACTTTCTTAATCTTTCTACCCTCTCCACATTGAATGTGGAGAACAATAATTTTACTGGATGGATACCCGAACAGTTGAAGGATATAAACCTACACAATTTGGTAATTCGGAATCAGATTTTCATCATAAATTTCTGTGGAGCTCTAATATTTGGCAAATTTAACATTAGGAGCGGTGGTAATGAATGGAGCTCCGGATCTGCACCCCCACCTCCTCCTGGTACACCTCCCATACCTAAAAGGAACAAACACCACCAGTCTGGAGGGGGAAGCACCACCACCCCAGATGTCGGTGACAGCAGCAGCTCAGTTGACGCGGGCAAAAAGTCCGGTATAGGAGGTGGTGCCATTGCTGGAATTGTAGTCTCTGTCATAGTTGTTGGGGCAATAGTAGCGTTCTTTCTGGTGAAGAGAAAATCCAAGAAGACATCTTCAGATTTAGAAAAGCTGGACAATCAATCCTTTGCTCCACTTCCCTCAAATGGAGTGCATGAAGAGAAGTCAGAGCAAACATCCTCTGTATCAGACATGAAGACGTTTGATACTTCTGCCTCAATAAATCTTAAACCCCCACCTATTGATCGACATAAATCATTTGATGATGAAGAGTTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGACCTGCAGATTGCTACTGGTAGCTTCAGTGTGGATCATCTTGTTGGCGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAGAGGTTCTTGCAGTGAAGAAGATAGATTCATCTGTCCTTTCCAATGATTTGTCAGATGATTTTATAGAAATAATTTCAAACATCTCCAGCTTGCATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAGCACCTGTTGGTCTACAAATTTCATAAAAATGGATCACTGCATGACTTCCTTCATCTACCAGACGAATATAGTAAACCACTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGTACTGCACGTGCTTTAGATTCGCCATCAGTTGTACATAAGAATATTAAATCAGCCAACATATTACTTGATGCAGAGCTCAATCCTCATCTTTCAGATAGTGGATTGGCTAGCTATATTCCAAACGCAGACCAGATATTGAGTCATAATGTTGGATCTGGATATGATGCCCCTGAAGTTGCGTTGTCTGGTCAGTATACTCTGCAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAACTTCTCAGCGGACGGATGCCATTTGACAGCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGTTGGGCAACACCTCAACTCCATGATATTGATGCATTGGGTAAAATGGTTGATCCTACATTGAAGGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTTATTGCCCTTTGCGTGCAGCCGGAGCCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGCAGTAGTGATCATGGAGGATCCCAACGAGGAAGTGATGAGGCAGCTCTACGGGAGATCTAA 1929 0.4381 MAMIHVGNLGKAFLAQATVLQRCMLSNLGLTGSLPYGLESLTSLRTLDMSGNSLGGSIPYQLPPYVQRLNLAYNNITGTVPYSISNLTALTDLNLGHNQLQQGLAVNFLNLSTLSTLNVENNNFTGWIPEQLKDINLHNLVIRNQIFIINFCGALIFGKFNIRSGGNEWSSGSAPPPPPGTPPIPKRNKHHQSGGGSTTTPDVGDSSSSVDAGKKSGIGGGAIAGIVVSVIVVGAIVAFFLVKRKSKKTSSDLEKLDNQSFAPLPSNGVHEEKSEQTSSVSDMKTFDTSASINLKPPPIDRHKSFDDEEFSKKPTIVKKTVTAPANVKSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGEVLAVKKIDSSVLSNDLSDDFIEIISNISSLHHPNVTELVGYCSEYGQHLLVYKFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALDSPSVVHKNIKSANILLDAELNPHLSDSGLASYIPNADQILSHNVGSGYDAPEVALSGQYTLQSDVYSFGVVMLELLSGRMPFDSSRPRSEQSLVRWATPQLHDIDALGKMVDPTLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEAALREI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00047 642 ProSiteProfiles Protein kinase domain profile. 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00047 642 Gene3D Transferase(Phosphotransferase) domain 1 421 630 - -
Vimu10g00047 642 MobiDBLite consensus disorder prediction 620 642 - -
Vimu10g00047 642 MobiDBLite consensus disorder prediction 252 283 - -
Vimu10g00047 642 Gene3D Ribonuclease Inhibitor 6 160 IPR032675 -
Vimu10g00047 642 MobiDBLite consensus disorder prediction 168 212 - -
Vimu10g00047 642 MobiDBLite consensus disorder prediction 191 212 - -
Vimu10g00047 642 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 622 - -
Vimu10g00047 642 SUPERFAMILY Protein kinase-like (PK-like) 324 608 IPR011009 -
Vimu10g00047 642 SUPERFAMILY L domain-like 13 141 - -
Vimu10g00047 642 Gene3D Phosphorylase Kinase; domain 1 304 419 - -
Vimu10g00047 642 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 306 419 - -
Vimu10g00047 642 PANTHER LEUCINE RICH REPEAT KINASE 2 17 616 - -
Vimu10g00047 642 MobiDBLite consensus disorder prediction 255 283 - -
Vimu10g00047 642 Pfam Protein tyrosine and serine/threonine kinase 345 608 IPR001245 GO:0004672|GO:0006468
Vimu10g00047 642 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00047 Vimu-Chr10 304390 309465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00047 25 621 Strubbelig Receptor Gene Family AT1G53730 60.443 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu10g00047 PK_Tyr_Ser-Thr 5.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00047 - - gmx:100807707 935.25