Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00044 ATGAAAGAAGGTTGCTTGCTCAAGAGTGAAGAGAAGAGAAGAGACAACATGATGACCATCCTGGTCTTCTTACTCACTGTTATTACAGTATTTGCACTTGTTCTGAAAATCCGAAGCAATAGCAGAAATTATGGTGATGGAGGGAAGAAGAGTGAAGGAGATTATTGTGCCGTGTGTCTGTGCCAAATCTCTGATGGAGGGAAGATACGGACCTTGCCGGGATGCCACCACCGTTTTCATCTTCATTGTATTGCTCCATGGTTCCACAACCATTCTACCTGCCCTCTCTGCAGAAACAATATCACTCTCCACGACAACCATCACAGCCACTCCCAACTTTTTAGAAACTCTCTCCTTCGTTTCTTCCGAAGTTTCTCTGATATATTCATTGTTCTTCTTTACATACTGCTTCCTCCAGCTACCAATCGTGAGTGTTTCCCCTTGCTTCACTAA 453 0.4371 MKEGCLLKSEEKRRDNMMTILVFLLTVITVFALVLKIRSNSRNYGDGGKKSEGDYCAVCLCQISDGGKIRTLPGCHHRFHLHCIAPWFHNHSTCPLCRNNITLHDNHHSHSQLFRNSLLRFFRSFSDIFIVLLYILLPPATNRECFPLLH 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00044 150 CDD RING-H2_PA-TM-RING 56 98 - -
Vimu10g00044 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 43 103 IPR044675 -
Vimu10g00044 150 SMART ring_2 56 97 IPR001841 -
Vimu10g00044 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Vimu10g00044 150 Pfam Ring finger domain 55 98 IPR001841 -
Vimu10g00044 150 SUPERFAMILY RING/U-box 51 107 - -
Vimu10g00044 150 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00044 Vimu-Chr10 294874 302883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00044 52 112 C3H Transcription Factor Family AT1G53820 51.613 1.40e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00044 - - pvu:PHAVU_009G261300g 165.622