Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00043 ATGAGTGAGCAAACTGACACTCTGGGTGAATCCCCCGCCGTTGCGTTAATCGGAAAGATAATGATAATCGTTATAATAATCTTCTTCTTCCTTGTTGTAATTGCTCTCGGCGTTCATCTCTTCACAAGAAACTTCTGGTGGCGCGAGCCTGCTCCCCAATCACGGCGCCGCCGCCGCTTTGTGTTTTCCACCGGTCAAGAGGGTGGTCTTCGAAGGGGATTGGATCCCTCCGTTCTGAACTCCATACCCGTGTTGGTATTCCAAGCCCAAGACTTAAAGGAGGGTTTGGAATGTGCAGTTTGCCTCTCGGAGGTGGTGGAAGGAGAAAAGGCCAGGCTTTTGCCTAAATGCAATCATGGGTTTCACGTTGATTGTATTGACATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGGAACTCTGTTGCTGCACAATCCGATGAAAATAACCAGAACTCAGAATCAGAGTCTCCGACTTTTCCCACTAACGTCTTGGTTTGGGGGGATCACAACCAAATAACTTCTACTGGTGGTGCTTCTTTGGAGGAAGGCGCTTCTCAGCCACCTTGCCCCTCCTCATCCTCTTCCGCTGCTACTTGCAATGATGATGATAGTAACAACAGTAGTAGACATCGGGGAACCTTGGTTATTGACATACCAAGTGATATCACTTCGACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCGCCGATGACGGGAAGACTGAGATCATTGAAGAGGCTTTTGAGCAGAGACAGAAAAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAAGCAGCTAATTCAGGGGGAGGGACACAGCTGAGTTAG 855 0.4807 MSEQTDTLGESPAVALIGKIMIIVIIIFFFLVVIALGVHLFTRNFWWREPAPQSRRRRRFVFSTGQEGGLRRGLDPSVLNSIPVLVFQAQDLKEGLECAVCLSEVVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNSVAAQSDENNQNSESESPTFPTNVLVWGDHNQITSTGGASLEEGASQPPCPSSSSSAATCNDDDSNNSSRHRGTLVIDIPSDITSTSLSPSASRFAEDDLKSPMTGRLRSLKRLLSRDRKNPWSPTSVDVEQAANSGGGTQLS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00043 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Vimu10g00043 284 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vimu10g00043 284 MobiDBLite consensus disorder prediction 261 284 - -
Vimu10g00043 284 SUPERFAMILY RING/U-box 78 147 - -
Vimu10g00043 284 SMART ring_2 98 139 IPR001841 -
Vimu10g00043 284 MobiDBLite consensus disorder prediction 176 234 - -
Vimu10g00043 284 Pfam Ring finger domain 97 140 IPR001841 -
Vimu10g00043 284 MobiDBLite consensus disorder prediction 176 284 - -
Vimu10g00043 284 CDD RING-H2_EL5-like 97 140 - -
Vimu10g00043 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 213 - -
Vimu10g00043 284 MobiDBLite consensus disorder prediction 241 260 - -
Vimu10g00043 284 FunFam RING-H2 finger protein ATL3 66 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00043 Vimu-Chr10 293255 294109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00043 17 262 C3H Transcription Factor Family AT1G53820 43.434 1.81e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00043 - - gmx:100797420 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00043 10 293255 294109 Vimu11g03167 11 51032250 51033212 PCT