Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00038 ATGTGGTGGAGATCAGCGTCATTCATCATGGACAGGCAGCAGAACGAGGCTGCTCTCAAGGGAGACACCGGAGCTCCTACCGACTCATCGATATCAAACCCTAACCCTAATCCTAACCCCAATTCTAACCCTAAGACCTCTGCCTACTATGAGACCAGAGCAGCACATCATGGCGTTGTCACCAGCGACTGGCTGGCCCAGGCTCAGGCCGCCATTGGGCCGGACCCTGATCCTCTACCTCAACTCAGGCCCGATCCTGACAAGCCGTTCAGCGTCATCAAGGAGTTTAATAACTGGCGGATACAGCCCCATTTGGCGGAGGCCGTCGCTGCCATTCGGGCCTTGGCCGCCGTCATAAGGACCAGCCGGGCTACCACCATGATGCAGCTGGAAATGGAGCTGAAGAAGGCCTCCGATACTCTGAAGTCGTGGGATGCCACCTCTATCTCTTTAACAGCGGGCTGTGATCTCTTTATGCGATATGTCACTCGGACTTCTGCTTTAGAATACGAAGACTTCAATTCCGCTAAATCTCGCTTGATTGAGCGTGCCGAGAAGTTCGGCGAAATCTCCCACAAGGCAACTTTCTCATTCGCACGCAAAGTTATCGCGATGTTGAGTCAGGATTTTATATTTGATGGTTGCACAATTTTGGTTCATGGTTTTTCCAGAGTTGTGTTGGAAGTCCTCAAACTGGCGGCACAAAACAAGAAATTATTTCGGGTCTTCTGCACAGTCCCTGTGCCCGTCCCAGTACTTAGGAAACTGTCGAATGATATCTCAAGGAGCAAAGAGGAATCTGTAATGATAAGTGGGGCAACAATCCAAGTACTTAGGAAACTGTGCTTTGGTAGGATAAATAGAGGAGGATTGTCGGGTCATAAGCAATTAGAGGGAAGACCAGATCGAACAGGATTGCGGTTGTCCAATGAACTGGCCAAGCTTGATGTTCCTGTGAAACTACTAATAGATTCTGCTGTAGCATATACTATGGATGAGGTGGACATGGTTTTTGTAGGTGCAGATGGAGTTGTGGAAAGTGGGGGCATAATCAACATGATGGGAACCTACCAAATTGCATTGGTTGCACACGGGATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTGCGCCCTATTGATTTCGGTGTACCTATTCCATCCAAGGTTGAGGTTGAAAGGTCCGCGCGGGACTACACCCCTCCTCAATACCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACCCCATCTGTTGTCAGTGATGAGCTGATCCAGCTATACTTATAG 1341 0.4884 MWWRSASFIMDRQQNEAALKGDTGAPTDSSISNPNPNPNPNSNPKTSAYYETRAAHHGVVTSDWLAQAQAAIGPDPDPLPQLRPDPDKPFSVIKEFNNWRIQPHLAEAVAAIRALAAVIRTSRATTMMQLEMELKKASDTLKSWDATSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISHKATFSFARKVIAMLSQDFIFDGCTILVHGFSRVVLEVLKLAAQNKKLFRVFCTVPVPVPVLRKLSNDISRSKEESVMISGATIQVLRKLCFGRINRGGLSGHKQLEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHGMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00038 446 Coils Coil 127 147 - -
Vimu10g00038 446 SUPERFAMILY NagB/RpiA/CoA transferase-like 297 445 IPR037171 -
Vimu10g00038 446 Gene3D - 89 190 IPR042528 -
Vimu10g00038 446 MobiDBLite consensus disorder prediction 19 47 - -
Vimu10g00038 446 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 56 446 - -
Vimu10g00038 446 Pfam Initiation factor 2 subunit family 297 434 IPR000649 GO:0044237
Vimu10g00038 446 Pfam Initiation factor 2 subunit family 102 246 IPR000649 GO:0044237
Vimu10g00038 446 FunFam Translation initiation factor eIF-2B subunit alpha 88 190 - -
Vimu10g00038 446 Gene3D - 197 446 IPR042529 -
Vimu10g00038 446 MobiDBLite consensus disorder prediction 25 47 - -
Vimu10g00038 446 SUPERFAMILY NagB/RpiA/CoA transferase-like 91 245 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00038 Vimu-Chr10 264910 267875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00038 1 446 Eukaryotic Initiation Factors Gene Family AT1G53880 68.363 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00038 K03239 - gmx:100799015 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00038 10 264910 267875 Vimu11g03153 11 50921295 50923282 PCT