Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00035 ATGTGTGGAGGAGCTATTATCTCCGACTTCATTCCGGCGGCGGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTCACCTGTGGTCGGATTTGAAGAAACGGACATCTGAGGTCATCCACTCGGACGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCAGCGAGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAAAAGGCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCTAAGTTAAATCCACCGGGAAATCGGAAGATTGTTCAACCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGACCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTTTGCTGACATGGGTTCCTTCCCCGGCAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTGATAATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTGTGCAGATCTTGGGTGGAGTGAAAAGGCTCCCAAAACTCCTGAGATCTCATCCATCCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGCACAGGATGCCACCCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGAGGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1080 0.4833 MCGGAIISDFIPAAVTARSRRITAGHLWSDLKKRTSEVIHSDDDFEADFRDFKDDSDIETDVDADHQVKPFAFSASSQRAVKSVAFNGGAEKAAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKRSKLNPPGNRKIVQPNVHKFNAGNNQNDLRWPMDLVEQKPLVNQFADMGSFPGSGNGLRSLPSTDNVTLYFSSDQGSNSFDCADLGWSEKAPKTPEISSILSAPLDCDSHFAQDATHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLEGSWEDTSLESLLSCDTTQDGGNLMNLWSFDDIPSMAGGVF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00035 359 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vimu10g00035 359 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vimu10g00035 359 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vimu10g00035 359 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vimu10g00035 359 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Vimu10g00035 359 PANTHER DNA-BINDING DOMAIN 77 298 IPR044808 GO:0003700|GO:0009873
Vimu10g00035 359 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vimu10g00035 359 MobiDBLite consensus disorder prediction 159 178 - -
Vimu10g00035 359 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vimu10g00035 359 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vimu10g00035 359 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00035 Vimu-Chr10 257259 259054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00035 1 359 AP2-EREBP Transcription Factor Family AT1G53910 45.178 3.90e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu10g00035 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00035 K09286 - gmx:100170723 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00035 10 257259 259054 Vimu11g03135 11 50744041 50746352 PCT