Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun9834g00004 ATGGCACAAAACTTAACGGAGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAGACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACACGGCCAAGATTACCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTATTACACCGGTAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTTTTACGCCTGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCGGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACATGTGAATGGGAAGACCTAGTGGCTTCACATGGTAATACCACTGCTATACCTAATGGAGGAGGCAACGAATCACATTTCTATCAACTAAATCAAAGGTTAATGAATGGAAGCGTTGGCAATGTTGCCGGTAGTCCTGGAGAAGTTCATTCTTTTGAGGCATCGGCTCTTGAATCATCGATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCCAATGGAACATAATCAACAACCTTCACTGCCGGAACAAGTGTTTCATCTCACTGAACTGGCCCCTGCTTGGGCTTCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCACATTCTCCAGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTACTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTTATTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGACTAAAAAATTCGCCTCCAGAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAATCGTCCGACGCAAACACACCTCCATTTCCGCAAGCAAAAAATACCTTTTTCGAAATTGCGTTGAAGAACAAATTAAGGGAATGGCTTTTGGAACGAATTGTACTACGATGCAAGACTGCGGAATATGATGCACACGGGCAAGGTGTGATTCATCTGTGTACACTTCTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTCCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTCTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTTGAAACAACCACAACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCCTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAACTGCGTTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGGAAAAAATTTCTCCACATGCGATGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTTCGTTGGCGTTTAAAGAGAAAAGGATTCCGTGGGCTTGAGGTGAGTCCTGTCGAAGACATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAGGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2580 0.4248 MAQNLTEQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDYPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVSSLGCGLTQSQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGRSLEQKLHELNTCEWEDLVASHGNTTAIPNGGGNESHFYQLNQRLMNGSVGNVAGSPGEVHSFEASALESSIASSVHDPFSSLPMEHNQQPSLPEQVFHLTELAPAWASSTEKTKVLVTGYFHNDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVMPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPTASMEDTYNWIEFRLQMRLSHLLFTTQKTLDLFSSKVSPTALEETKKFASRTLFISKSLQHFMKSSDANTPPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAHGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKKFLHMRCQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLKRKGFRGLEVSPVEDMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun9834g00004 859 Gene3D - 450 603 IPR036770 -
Vifaun9834g00004 859 ProSiteProfiles Ankyrin repeat region circular profile. 540 568 - -
Vifaun9834g00004 859 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vifaun9834g00004 859 ProSiteProfiles IQ motif profile. 808 836 IPR000048 GO:0005515
Vifaun9834g00004 859 MobiDBLite consensus disorder prediction 164 196 - -
Vifaun9834g00004 859 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 283 836 - -
Vifaun9834g00004 859 Gene3D Immunoglobulins 299 394 IPR013783 -
Vifaun9834g00004 859 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vifaun9834g00004 859 Gene3D - 651 705 - -
Vifaun9834g00004 859 Gene3D - 706 751 - -
Vifaun9834g00004 859 ProSiteProfiles IQ motif profile. 651 680 IPR000048 GO:0005515
Vifaun9834g00004 859 SUPERFAMILY E set domains 305 391 IPR014756 -
Vifaun9834g00004 859 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vifaun9834g00004 859 Pfam Ankyrin repeats (3 copies) 482 569 IPR002110 GO:0005515
Vifaun9834g00004 859 ProSiteProfiles IQ motif profile. 727 751 IPR000048 GO:0005515
Vifaun9834g00004 859 SMART iq_5 726 748 IPR000048 GO:0005515
Vifaun9834g00004 859 SMART iq_5 806 828 IPR000048 GO:0005515
Vifaun9834g00004 859 SMART iq_5 703 725 IPR000048 GO:0005515
Vifaun9834g00004 859 SMART iq_5 650 672 IPR000048 GO:0005515
Vifaun9834g00004 859 FunFam Calmodulin-binding transcription activator 5 299 395 - -
Vifaun9834g00004 859 Pfam IQ calmodulin-binding motif 731 748 IPR000048 GO:0005515
Vifaun9834g00004 859 SUPERFAMILY Ankyrin repeat 475 602 IPR036770 -
Vifaun9834g00004 859 ProSiteProfiles Ankyrin repeat profile. 540 572 IPR002110 GO:0005515
Vifaun9834g00004 859 FunFam calmodulin-binding transcription activator 5 470 610 - -
Vifaun9834g00004 859 SMART ANK_2a 540 569 IPR002110 GO:0005515
Vifaun9834g00004 859 SMART ANK_2a 579 610 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun9834g00004 29 846 CAMTA Transcription Factor Family AT3G16940 55.647 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifaun9834g00004 CG-1 3.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun9834g00004 K21596 - gmx:100776839 1125.54