Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun9834g00003 ATGGCACAAAACTTAACGGAGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAGACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACACGGCCAAGATTACCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTATTACACCGGTAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTTTTACGCCTGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCGGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGGCTGAATGGAAATTTAACAGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACATGTGAATGGGAAGACCTAGTGGCTTCACATGGTAATACCACTGCTATACCTAATGGAGGAGGCAACGAATCACATTTCTATCAACTAAATCAAAGGTTAATGAATGGAAGCGTTGGCAATGTTGCCGGTAGTCCTGGAGAAGTTCATTCTTTTGAGGCATCGGCTCTTGAATCATCGATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCCAATGGAACATAATCAACAACCTTCACTGCCGGAACAAGTGTTTCATCTCACTGAACTGGCCCCTGCTTGGGCTTCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCACATTCTCCAGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTACTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTTATTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGACTAAAAAATTCGCCTCCAGAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAATCGTCCGACGCAAACACACCTCCATTTCCGCAAGCAAAAAATACCTTTTTCGAAATTGCGTTGAAGAACAAATTAAGGGAATGGCTTTTGGAACGAATTGTACTACGATGCAAGACTGCGGAATATGATGCACACGGGCAAGGTGTGATTCATCTGTGTACACTTCTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTCCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTCTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTTGAAACAACCACAACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCCTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAACTGCGTTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGGAAAAAATTTCTCCACATGCGATGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTTCGTTGGCGTTTAAAGAGAAAAGGATTCCGTGGGCTTGAGGTGAGTCCTGTCGAAGACATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAGGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2601 0.4245 MAQNLTEQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDYPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVSSLGCGLTQSQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGLNGNLTGRSLEQKLHELNTCEWEDLVASHGNTTAIPNGGGNESHFYQLNQRLMNGSVGNVAGSPGEVHSFEASALESSIASSVHDPFSSLPMEHNQQPSLPEQVFHLTELAPAWASSTEKTKVLVTGYFHNDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVMPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPTASMEDTYNWIEFRLQMRLSHLLFTTQKTLDLFSSKVSPTALEETKKFASRTLFISKSLQHFMKSSDANTPPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAHGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKKFLHMRCQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLKRKGFRGLEVSPVEDMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun9834g00003 866 ProSiteProfiles IQ motif profile. 658 687 IPR000048 GO:0005515
Vifaun9834g00003 866 FunFam calmodulin-binding transcription activator 5 477 617 - -
Vifaun9834g00003 866 SUPERFAMILY Ankyrin repeat 482 609 IPR036770 -
Vifaun9834g00003 866 Gene3D - 457 610 IPR036770 -
Vifaun9834g00003 866 ProSiteProfiles Ankyrin repeat region circular profile. 547 575 - -
Vifaun9834g00003 866 SUPERFAMILY E set domains 312 398 IPR014756 -
Vifaun9834g00003 866 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vifaun9834g00003 866 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vifaun9834g00003 866 Pfam IQ calmodulin-binding motif 738 755 IPR000048 GO:0005515
Vifaun9834g00003 866 ProSiteProfiles IQ motif profile. 815 843 IPR000048 GO:0005515
Vifaun9834g00003 866 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vifaun9834g00003 866 Gene3D - 658 712 - -
Vifaun9834g00003 866 Gene3D - 713 758 - -
Vifaun9834g00003 866 Gene3D Immunoglobulins 306 401 IPR013783 -
Vifaun9834g00003 866 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 290 843 - -
Vifaun9834g00003 866 SMART iq_5 710 732 IPR000048 GO:0005515
Vifaun9834g00003 866 SMART iq_5 657 679 IPR000048 GO:0005515
Vifaun9834g00003 866 SMART iq_5 813 835 IPR000048 GO:0005515
Vifaun9834g00003 866 SMART iq_5 733 755 IPR000048 GO:0005515
Vifaun9834g00003 866 SMART ANK_2a 547 576 IPR002110 GO:0005515
Vifaun9834g00003 866 SMART ANK_2a 586 617 IPR002110 GO:0005515
Vifaun9834g00003 866 FunFam Calmodulin-binding transcription activator 5 306 402 - -
Vifaun9834g00003 866 Pfam Ankyrin repeats (3 copies) 489 576 IPR002110 GO:0005515
Vifaun9834g00003 866 ProSiteProfiles IQ motif profile. 734 758 IPR000048 GO:0005515
Vifaun9834g00003 866 MobiDBLite consensus disorder prediction 164 186 - -
Vifaun9834g00003 866 ProSiteProfiles Ankyrin repeat profile. 547 579 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun9834g00003 29 853 CAMTA Transcription Factor Family AT3G16940 55.076 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifaun9834g00003 CG-1 3.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun9834g00003 K21596 - gmx:100776839 1151.73