Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun9834g00002 ATGGCACAAAACTTAACGGAGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAGACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACACGGCCAAGATTACCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTATTACACCGGTAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTTTTACGCCTGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCGGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGGCTGAATGGAAATTTAACAGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACATGTGAATGGGAAGACCTAGTGGCTTCACATGGTAATACCACTGCTATACCTAATGGAGGAGGCAACGAATCACATTTCTATCAACTAAATCAAAGGTTAATGAATGGAAGCGTTGGCAATAGTTTTTATTACCAGGTTGCCGGTAGTCCTGGAGAAGTTCATTCTTTTGAGGCATCGGCTCTTGAATCATCGATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCCAATGGAACATAATCAACAACCTTCACTGCCGGAACAAGTGTTTCATCTCACTGAACTGGCCCCTGCTTGGGCTTCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCACATTCTCCAGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTACTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTTATTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGACTAAAAAATTCGCCTCCAGAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAATCGTCCGACGCAAACACACCTCCATTTCCGCAAGCAAAAAATACCTTTTTCGAAATTGCGTTGAAGAACAAATTAAGGGAATGGCTTTTGGAACGAATTGTACTACGATGCAAGACTGCGGAATATGATGCACACGGGCAAGGTGTGATTCATCTGTGTACACTTCTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTCCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTCTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTTGAAACAACCACAACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCCTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAACTGCGTTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGGAAAAAATTTCTCCACATGCGATGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTTCGTTGGCGTTTAAAGAGAAAAGGATTCCGTGGGCTTGAGGTGAGTCCTGTCGAAGACATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAGGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2616 0.4235 MAQNLTEQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDYPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVSSLGCGLTQSQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGLNGNLTGRSLEQKLHELNTCEWEDLVASHGNTTAIPNGGGNESHFYQLNQRLMNGSVGNSFYYQVAGSPGEVHSFEASALESSIASSVHDPFSSLPMEHNQQPSLPEQVFHLTELAPAWASSTEKTKVLVTGYFHNDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVMPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPTASMEDTYNWIEFRLQMRLSHLLFTTQKTLDLFSSKVSPTALEETKKFASRTLFISKSLQHFMKSSDANTPPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAHGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKKFLHMRCQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLKRKGFRGLEVSPVEDMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun9834g00002 871 SMART ANK_2a 591 622 IPR002110 GO:0005515
Vifaun9834g00002 871 SMART ANK_2a 552 581 IPR002110 GO:0005515
Vifaun9834g00002 871 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 295 848 - -
Vifaun9834g00002 871 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vifaun9834g00002 871 Gene3D - 718 763 - -
Vifaun9834g00002 871 Gene3D - 663 717 - -
Vifaun9834g00002 871 ProSiteProfiles IQ motif profile. 820 848 IPR000048 GO:0005515
Vifaun9834g00002 871 Pfam Ankyrin repeats (3 copies) 494 581 IPR002110 GO:0005515
Vifaun9834g00002 871 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vifaun9834g00002 871 SUPERFAMILY E set domains 317 403 IPR014756 -
Vifaun9834g00002 871 FunFam Calmodulin-binding transcription activator 5 311 407 - -
Vifaun9834g00002 871 Gene3D - 486 621 IPR036770 -
Vifaun9834g00002 871 Gene3D Immunoglobulins 311 406 IPR013783 -
Vifaun9834g00002 871 SUPERFAMILY Ankyrin repeat 487 614 IPR036770 -
Vifaun9834g00002 871 ProSiteProfiles IQ motif profile. 663 692 IPR000048 GO:0005515
Vifaun9834g00002 871 SMART iq_5 662 684 IPR000048 GO:0005515
Vifaun9834g00002 871 SMART iq_5 818 840 IPR000048 GO:0005515
Vifaun9834g00002 871 SMART iq_5 738 760 IPR000048 GO:0005515
Vifaun9834g00002 871 SMART iq_5 715 737 IPR000048 GO:0005515
Vifaun9834g00002 871 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Vifaun9834g00002 871 ProSiteProfiles Ankyrin repeat region circular profile. 552 580 - -
Vifaun9834g00002 871 Pfam IQ calmodulin-binding motif 743 760 IPR000048 GO:0005515
Vifaun9834g00002 871 ProSiteProfiles IQ motif profile. 739 763 IPR000048 GO:0005515
Vifaun9834g00002 871 MobiDBLite consensus disorder prediction 167 186 - -
Vifaun9834g00002 871 FunFam calmodulin-binding transcription activator 5 482 622 - -
Vifaun9834g00002 871 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun9834g00002 29 858 CAMTA Transcription Factor Family AT3G16940 55.309 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifaun9834g00002 CG-1 3.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun9834g00002 K21596 - gmx:100776839 1192.95