Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun9834g00001 ATGGCACAAAACTTAACGGAGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAGACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACACGGCCAAGATTACCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTTTTACGCCTGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCGGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGGCTGAATGGAAATTTAACAGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACATGTGAATGGGAAGACCTAGTGGCTTCACATGGTAATACCACTGCTATACCTAATGGAGGAGGCAACGAATCACATTTCTATCAACTAAATCAAAGGTTAATGAATGGAAGCGTTGGCAATGTTGCCGGTAGTCCTGGAGAAGTTCATTCTTTTGAGGCATCGGCTCTTGAATCATCGATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCCAATGGAACATAATCAACAACCTTCACTGCCGGAACAAGTGTTTCATCTCACTGAACTGGCCCCTGCTTGGGCTTCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTAATGCCACATTCTCCAGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTACTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTTATTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGACTAAAAAATTCGCCTCCAGAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAATCGTCCGACGCAAACACACCTCCATTTCCGCAAGCAAAAAATACCTTTTTCGAAATTGCGTTGAAGAACAAATTAAGGGAATGGCTTTTGGAACGAATTGTACTACGATGCAAGACTGCGGAATATGATGCACACGGGCAAGGTGTGATTCATCTGTGTACACTTCTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTCCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTCTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTTGAAACAACCACAACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCCTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAACTGCGTTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGGAAAAAATTTCTCCACATGCGATGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTTCGTTGGCGTTTAAAGAGAAAAGGATTCCGTGGGCTTGAGGTGAGTCCTGTCGAAGACATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAGGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2547 0.424 MAQNLTEQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDYPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGLNGNLTGRSLEQKLHELNTCEWEDLVASHGNTTAIPNGGGNESHFYQLNQRLMNGSVGNVAGSPGEVHSFEASALESSIASSVHDPFSSLPMEHNQQPSLPEQVFHLTELAPAWASSTEKTKVLVTGYFHNDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVMPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPTASMEDTYNWIEFRLQMRLSHLLFTTQKTLDLFSSKVSPTALEETKKFASRTLFISKSLQHFMKSSDANTPPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAHGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKKFLHMRCQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLKRKGFRGLEVSPVEDMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun9834g00001 848 ProSiteProfiles Ankyrin repeat profile. 529 561 IPR002110 GO:0005515
Vifaun9834g00001 848 MobiDBLite consensus disorder prediction 148 168 - -
Vifaun9834g00001 848 SMART iq_5 639 661 IPR000048 GO:0005515
Vifaun9834g00001 848 SMART iq_5 795 817 IPR000048 GO:0005515
Vifaun9834g00001 848 SMART iq_5 715 737 IPR000048 GO:0005515
Vifaun9834g00001 848 SMART iq_5 692 714 IPR000048 GO:0005515
Vifaun9834g00001 848 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vifaun9834g00001 848 SUPERFAMILY E set domains 294 380 IPR014756 -
Vifaun9834g00001 848 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vifaun9834g00001 848 SUPERFAMILY Ankyrin repeat 464 591 IPR036770 -
Vifaun9834g00001 848 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
Vifaun9834g00001 848 FunFam Calmodulin-binding transcription activator 5 288 384 - -
Vifaun9834g00001 848 Pfam Ankyrin repeats (3 copies) 471 558 IPR002110 GO:0005515
Vifaun9834g00001 848 ProSiteProfiles IQ motif profile. 716 740 IPR000048 GO:0005515
Vifaun9834g00001 848 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vifaun9834g00001 848 Gene3D Immunoglobulins 288 383 IPR013783 -
Vifaun9834g00001 848 ProSiteProfiles IQ motif profile. 797 825 IPR000048 GO:0005515
Vifaun9834g00001 848 ProSiteProfiles Ankyrin repeat region circular profile. 529 557 - -
Vifaun9834g00001 848 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 272 825 - -
Vifaun9834g00001 848 Pfam IQ calmodulin-binding motif 720 737 IPR000048 GO:0005515
Vifaun9834g00001 848 Gene3D - 640 694 - -
Vifaun9834g00001 848 Gene3D - 695 740 - -
Vifaun9834g00001 848 FunFam calmodulin-binding transcription activator 5 459 599 - -
Vifaun9834g00001 848 SMART ANK_2a 529 558 IPR002110 GO:0005515
Vifaun9834g00001 848 SMART ANK_2a 568 599 IPR002110 GO:0005515
Vifaun9834g00001 848 Gene3D - 439 592 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun9834g00001 29 835 CAMTA Transcription Factor Family AT3G16940 55.728 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifaun9834g00001 CG-1 3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun9834g00001 K21596 - gmx:100776839 1155.58