Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun8683g00001 ATGCTTTCTTCGCGTTGCCTTCTGTTTTTACTTCTTCCTCTGTTTTTTACAATAAACTCTGATGCCAACGACCAACTAATTTTCCGCAACCACAAGTGTAACAATGATCTCGGAAACTTTACAGGTGATAGTGCCTACCCAAACAACCGTGACACCGTTCTAGGAAAAATATATTCCGACAGAGAAATAGACTATGGATTCTACAATTTCTCATACGGCGAAGAACCTGACATAGTAAATGCAATCGGATTCTGCAGAGGAGATGTTAATCCAAATGACTGTCGTGACTGCTTGAAATCCTCCGCAGTACTTCTCACAGAACGGTGTCCAATACAGAAAGAGGCAATTGGTTACTACGACTTGTGCACCTTGCGCTATTCTAACGCTTCAATTTTCGGTGTCATGAATACTAATGGTTATGTTTACAATAGCGGAAAAAAGGCAGTGCTGGATGATGCATTTAATCAAACACTTAGTGGCTTGTTGGATGAACTTAAAAGCGCTGGGGCGGAAGGTGATTCGCGTAAGAAGTTTGCTGAAAAGAGTGTTAAAGTAATTGAATCAAATAGTAGTAATAATGATACTATATATGGTCTGGTTCAGTGTACACCAGATTTGACAAAACAAAATTGTACTACATGTTTGGATTTGGCTTTCGATGATCTTTTATTTTGGTGTAAAGAAATGAAAGATTGTTTGTATCTTGGACCAAGTTGTTCGGTTAGATATGATATAGTTCAGTTTTATCAGTCTATAGTTAACAATACAGATTCACCAGCACCACAACCTTCTTCCCAAGCAATTTCTCCTAAAGCTTCATCAGGCAACTCTACCACCAACCCTTCTAATACTAAAGGAAAGAAGAGGGTATTACGAACGGCCATCGCTATCGTTTTAGCATTGGTTGTAGCTGCCATACTAGTTGTTGGTGGATGTATTTATTGCGAAAGGAGAAAGTCAAAACCCCAATATACTGCTGAAATTGAAGATGCAGTCCAAGAGACATATGAAGATGAAGATGAAGTTAAAGCTGGCAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAAATTAGCTACAGGAAACTTTTCTGATGCAAGTGCACTTGGTCAAGGAGGATTTGGAACTGTTTATAAGGGTACACTCGATGGACTTGATGTTGCTATCAAAAGGTTGGCTAACAATTCTAAGCAAGGAGAAACAGAATTCAAGAATGAAGTATTACTTACGGGGAAGCTTCAACATCGAAATTTAGTTAAACTACTAGGTTTTTGTTTACATAGAGGAGAAAGACTGCTAATATACGAGTTCGTCCCCAACAAAAGTCTCGACTATATCATATTTGATCCAATCAAACGTGCGAATTTAAATTGGGAAAGACGCCTCAAAATCATTAAAGATATTGCTCGCGATTTTGGCATTGCAAAGTTGTTTGCCCCCAATCAAACCCATGGCATGACAAGTACGGTTATTGGAACTTATGGATATATGGCTCCAGAATATATCAAACATGGAGAATTCTCAATCAAATCAGATGTATTTAGTTTTGGTGTAATTGTTTTAGAAATTGTCTGCGGTCGGAGAAACACTAAGTTTCGTGACGGGGAGAATATAAAAGATCTATTAGATAATGCATGGGAAAACTGGAAGACAGGGACAAGTTTGGATATTGTAGATCCAATGTTAGAGCAAGATTTAAATAAGGATGAAAAAAAGAGATGCATCCATGTTGGATTACTCTGTGTTCAAGAAGATATAGATATGAGACCAACTATGAGTTCTGTTTTACTAATGCTTAGTAGCACATCTTATCCACTCCCTGAACCTTCAGAACCTCCATTTTTAATGCAACCCAAAAGGGCATTATCTATATCATTAAGTGATTATTCAGGTCTCACAAAGTCAAGTGATTCTGGGTCAGGAAGTCAATTTACTCAAGGATCAACAACTAAGTCCTCAGTGACAGATCAATAA 1989 0.3771 MLSSRCLLFLLLPLFFTINSDANDQLIFRNHKCNNDLGNFTGDSAYPNNRDTVLGKIYSDREIDYGFYNFSYGEEPDIVNAIGFCRGDVNPNDCRDCLKSSAVLLTERCPIQKEAIGYYDLCTLRYSNASIFGVMNTNGYVYNSGKKAVLDDAFNQTLSGLLDELKSAGAEGDSRKKFAEKSVKVIESNSSNNDTIYGLVQCTPDLTKQNCTTCLDLAFDDLLFWCKEMKDCLYLGPSCSVRYDIVQFYQSIVNNTDSPAPQPSSQAISPKASSGNSTTNPSNTKGKKRVLRTAIAIVLALVVAAILVVGGCIYCERRKSKPQYTAEIEDAVQETYEDEDEVKAGNDLKVGDLLQFDFETIKLATGNFSDASALGQGGFGTVYKGTLDGLDVAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLHRGERLLIYEFVPNKSLDYIIFDPIKRANLNWERRLKIIKDIARDFGIAKLFAPNQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDVFSFGVIVLEIVCGRRNTKFRDGENIKDLLDNAWENWKTGTSLDIVDPMLEQDLNKDEKKRCIHVGLLCVQEDIDMRPTMSSVLLMLSSTSYPLPEPSEPPFLMQPKRALSISLSDYSGLTKSSDSGSGSQFTQGSTTKSSVTDQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun8683g00001 662 Gene3D - 26 130 IPR038408 -
Vifaun8683g00001 662 Gene3D - 137 248 IPR038408 -
Vifaun8683g00001 662 MobiDBLite consensus disorder prediction 636 662 - -
Vifaun8683g00001 662 SUPERFAMILY Protein kinase-like (PK-like) 353 634 IPR011009 -
Vifaun8683g00001 662 MobiDBLite consensus disorder prediction 257 285 - -
Vifaun8683g00001 662 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Vifaun8683g00001 662 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Vifaun8683g00001 662 ProSitePatterns Protein kinases ATP-binding region signature. 374 395 IPR017441 GO:0005524
Vifaun8683g00001 662 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Vifaun8683g00001 662 ProSiteProfiles Gnk2-homologous domain profile. 135 248 IPR002902 -
Vifaun8683g00001 662 Gene3D Phosphorylase Kinase; domain 1 329 442 - -
Vifaun8683g00001 662 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 331 442 - -
Vifaun8683g00001 662 Gene3D Transferase(Phosphotransferase) domain 1 476 610 - -
Vifaun8683g00001 662 ProSiteProfiles Protein kinase domain profile. 368 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun8683g00001 662 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vifaun8683g00001 662 Pfam Protein tyrosine and serine/threonine kinase 476 601 IPR001245 GO:0004672|GO:0006468
Vifaun8683g00001 662 Pfam Protein tyrosine and serine/threonine kinase 372 475 IPR001245 GO:0004672|GO:0006468
Vifaun8683g00001 662 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 137 475 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun8683g00001 36 650 Receptor kinase-like Gene Family AT4G21410 39.848 6.19e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifaun8683g00001 PK_Tyr_Ser-Thr 2.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun8683g00001 - - tpra:123882259 905.205