Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun8518g00003 ATGGCCCCTCCAAAAGGTGAGAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTCAAGTCGGGCTCTGCTATTAAGAAGAAGGCGAAGAAGATCCGAACAACGGTCACTTTCCATCGCCCGAAGACCCAAACTAAGGACCGAAATCCTAAGTACCCTCGCATTAGTGCCACCCCTAGGAATAAACTTGATCACTACCAGATTTTGAAGTTCCCACTCACCACTGAATCTGCCATGAAGAAAATTGAGGATAACAACACTTTGGTCTTCATTGTGGATTTGCGTGCTGATAAGAAGAAGATTAAGGATGCAGTCAAGAAAATGTATGACATCCAGGCCAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACTCCTGATTACGATGCGTTGGATGTTGCAAACAAGATTGGCATTATCTAA 459 0.4553 MAPPKGEKKADPKAQALKAAKAVKSGSAIKKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun8518g00003 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifaun8518g00003 152 MobiDBLite consensus disorder prediction 1 15 - -
Vifaun8518g00003 152 Pfam Ribosomal protein L23, N-terminal domain 13 61 IPR005633 -
Vifaun8518g00003 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 GO:0019843
Vifaun8518g00003 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifaun8518g00003 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifaun8518g00003 152 MobiDBLite consensus disorder prediction 42 61 - -
Vifaun8518g00003 152 Gene3D - 33 152 IPR012677 -
Vifaun8518g00003 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifaun8518g00003 152 MobiDBLite consensus disorder prediction 1 35 - -
Vifaun8518g00003 152 FunFam 60S ribosomal protein L23a 31 152 - -
Vifaun8518g00003 152 NCBIfam 50S ribosomal protein L23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun8518g00003 25 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 3.64e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun8518g00003 K02893 - pvy:116105236 236.113