Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun8333g00002 ATGGAGAGGTTAGAGTTGAAAGAGGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAATCCGGCCACTGGTCATGCCGGTGTTCCGCTCGTTTTCGCTTCTTGCAGCGGCGATAAAACCGTTCGAATCTGGGAACAGAACCTCTCCAATAGCCTCTTCTCATGCAAGGCGGTTTTGGAAGAAACACATACTCGAACTGTTCGATCTTGTGCTTGGTCACCTTCTGGGAAATTGTTAGCTACTGCAAGTTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAACGAAGTAAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGCAGTAGAGATAAGTCCGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTCTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACAGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTCTGGGCAGATGAAGGTGATAGTGACGATTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAAGGCAGGAACTTCGGGCATTATTCAGTCAGTATGGGAGATGATGAGACATGAGTTTGAGTGGGAACACAATATGATGTAA 693 0.4545 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGVPLVFASCSGDKTVRIWEQNLSNSLFSCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNKAGTSGIIQSVWEMMRHEFEWEHNMM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun8333g00002 230 PANTHER WD40 PROTEIN CIAO1 6 202 IPR028608 GO:0016226|GO:0097361
Vifaun8333g00002 230 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Vifaun8333g00002 230 Gene3D - 35 216 IPR015943 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Vifaun8333g00002 230 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Vifaun8333g00002 230 Pfam WD domain, G-beta repeat 60 96 IPR001680 GO:0005515
Vifaun8333g00002 230 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Vifaun8333g00002 230 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Vifaun8333g00002 230 SMART WD40_4 5 50 IPR001680 GO:0005515
Vifaun8333g00002 230 SMART WD40_4 147 186 IPR001680 GO:0005515
Vifaun8333g00002 230 SMART WD40_4 57 97 IPR001680 GO:0005515
Vifaun8333g00002 230 SMART WD40_4 102 141 IPR001680 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Vifaun8333g00002 230 SUPERFAMILY WD40 repeat-like 4 208 IPR036322 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 59 IPR001680 GO:0005515
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Vifaun8333g00002 230 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Vifaun8333g00002 230 PRINTS G protein beta WD-40 repeat signature 84 98 IPR020472 -
Vifaun8333g00002 230 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Vifaun8333g00002 230 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Vifaun8333g00002 230 CDD WD40 8 200 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun8333g00002 12 208 U-box Gene Family AT2G33340 24.268 4.38e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun8333g00002 K24730 - gmx:100778826 404.445