Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun8333g00001 ATGGAGAGGTTAGAGTTGAAAGAGGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAATCCGGCCACTGGTCATGCCGGTGTTCCGCTCGTTTTCGCTTCTTGCAGCGGCGATAAAACCGTTCGAATCTGGGAACAGAACCTCTCCAATAGCCTCTTCTCATGCAAGGCGGTTTTGGAAGAAACACATACTCGAACTGTTCGATCTTGTGCTTGGTCACCTTCTGGGAAATTGTTAGCTACTGCAAGTTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAACGAAGTAAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGCAGTAGAGATAAGTCCGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTCTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACAGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTCTGGGCAGATGAAGGTGATAGTGACGATTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAAGTCATACTTTATGCATTCTTCTTGGTCTACCAATATTGAAGGTGAATGTGGTATTTACTGCAATAACTTCAATATGCACAATTGGTTGGGTTGGTGGTTATGCAGTTCCAATATTTGCAAGAATGGTAATGCCTGA 750 0.4413 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGVPLVFASCSGDKTVRIWEQNLSNSLFSCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNKSYFMHSSWSTNIEGECGIYCNNFNMHNWLGWWLCSSNICKNGNA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun8333g00001 249 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Vifaun8333g00001 249 Gene3D - 33 217 IPR015943 GO:0005515
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Vifaun8333g00001 249 SMART WD40_4 5 50 IPR001680 GO:0005515
Vifaun8333g00001 249 SMART WD40_4 147 186 IPR001680 GO:0005515
Vifaun8333g00001 249 SMART WD40_4 57 97 IPR001680 GO:0005515
Vifaun8333g00001 249 SMART WD40_4 102 141 IPR001680 GO:0005515
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Vifaun8333g00001 249 PANTHER WD40 PROTEIN CIAO1 6 205 IPR028608 GO:0016226|GO:0097361
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Vifaun8333g00001 249 SUPERFAMILY WD40 repeat-like 4 216 IPR036322 GO:0005515
Vifaun8333g00001 249 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Vifaun8333g00001 249 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Vifaun8333g00001 249 PRINTS G protein beta WD-40 repeat signature 84 98 IPR020472 -
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 59 IPR001680 GO:0005515
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Vifaun8333g00001 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Vifaun8333g00001 249 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Vifaun8333g00001 249 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Vifaun8333g00001 249 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Vifaun8333g00001 249 Pfam WD domain, G-beta repeat 60 96 IPR001680 GO:0005515
Vifaun8333g00001 249 CDD WD40 8 200 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun8333g00001 12 185 U-box Gene Family AT2G33340 25.000 1.00e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun8333g00001 K24730 - gmx:100778826 404.831