Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7915g00001 ATGGAAGCTAAGAGTGCTATGGAGAGGAACCAAACATCAGTTGAGAAAGTGTGGGAAGACAACATAGTTGAAGAAACAGAAGATCAAGAAGAGGAAGAGGATGATGGTGTTGAAAAAGATGAGAAAAAGAAAGGACTGAGCCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTTGCAGAGTTTGATGAAGCTAAAAGAAGTTGTCGGAGACGCTTAGCAAAACACAATGAGCGACGGCGCAAAAGCTCTGCCGGAACATGCAATGAAGGAAGCAGTACTGGTCAGCAACATAATGCTGGTGAATGGAGAAAAATTCGTATGAACATTACGGGGAGTCCTGGTCACGAGTATTTGAATTTCAGATGA 372 0.4328 MEAKSAMERNQTSVEKVWEDNIVEETEDQEEEEDDGVEKDEKKKGLSQRFCQQCSRFHELAEFDEAKRSCRRRLAKHNERRRKSSAGTCNEGSSTGQQHNAGEWRKIRMNITGSPGHEYLNFR 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7915g00001 123 MobiDBLite consensus disorder prediction 21 36 - -
Vifaun7915g00001 123 MobiDBLite consensus disorder prediction 87 101 - -
Vifaun7915g00001 123 Pfam SBP domain 43 83 IPR004333 GO:0003677
Vifaun7915g00001 123 ProSiteProfiles Zinc finger SBP-type profile. 2 84 IPR004333 GO:0003677
Vifaun7915g00001 123 Gene3D - 40 71 IPR036893 GO:0003677|GO:0005634
Vifaun7915g00001 123 MobiDBLite consensus disorder prediction 1 46 - -
Vifaun7915g00001 123 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 94 IPR044817 GO:0003677
Vifaun7915g00001 123 Coils Coil 60 80 - -
Vifaun7915g00001 123 MobiDBLite consensus disorder prediction 74 104 - -
Vifaun7915g00001 123 SUPERFAMILY SBT domain 44 87 IPR036893 GO:0003677|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7915g00001 45 93 SBP-box Gene Family AT3G15270 79.592 3.29e-21 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifaun7915g00001 SBP 7.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7915g00001 - - gmx:100815775 112.079