Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7875g00003 ATGGTTGCATTCTGTTCTCCTCAGTTCTCATACTCAAACATGGGATGGCTCTTACAAGAGTTAGAGCCTGCAGAGTCCTTAAACATAAGCCATAACGAGAAGAGCTATGCAAATGATTTAGAGTACTCTTTACCTCAATATCATCAATTCTCTTCGCTGAAGCAACAACAAGTTGAGATTCAAACGCCACCACCTTCGCCTAAGCTTATGGTGAAGAAGCTTAACCACAATGCTAGTGAACGTGACCGCCGCAAAAAGATCAATAGCTTGATTTCTTCACTTCGTTCACTTCTTCCCAATGAAGATCAAACGAAAAAAATGAGCATTCCGGTAACAATTTCAAGAGTTTTAAAATACATACCGGAATTACAAAAGCAGGTGGAAGGATTAACAAAGAAAAAAGAAGAGCTTCTATCAAGAATTTCTCAGCAACAATATCCTGTGAGCAAAGAATCACAAAGGAAAATAATTCCTAATAATTACAATTCTTCTTTTGTGGTTTCAACAAGTAGGCTTATTGATAATGAACTTGCTATTCATATTTCATCTTATGAGCCTTACAAGATTCCATTATCAGAGATCTTAATGTGTTTAGAAAATAATGGATTCCTTCTACTAAATTCTTCTTCTTCTAAAACATTTGGCGGAAGACTGTTCTACAACTTGCATATTCAGGTGGAGAATGCTCAAAGTTTAGAGTGCGATGTTCTAATTCAGAAGCTTTTGTCAATACATGAGAAGCAAGGATGTAAGCAAATTAGTGTTGGAAGATAA 774 0.3605 MVAFCSPQFSYSNMGWLLQELEPAESLNISHNEKSYANDLEYSLPQYHQFSSLKQQQVEIQTPPPSPKLMVKKLNHNASERDRRKKINSLISSLRSLLPNEDQTKKMSIPVTISRVLKYIPELQKQVEGLTKKKEELLSRISQQQYPVSKESQRKIIPNNYNSSFVVSTSRLIDNELAIHISSYEPYKIPLSEILMCLENNGFLLLNSSSSKTFGGRLFYNLHIQVENAQSLECDVLIQKLLSIHEKQGCKQISVGR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7875g00003 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Vifaun7875g00003 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 230 - -
Vifaun7875g00003 257 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Vifaun7875g00003 257 SMART finulus 77 129 IPR011598 GO:0046983
Vifaun7875g00003 257 FunFam Transcription factor ORG2 67 153 - -
Vifaun7875g00003 257 Coils Coil 120 140 - -
Vifaun7875g00003 257 Gene3D - 66 153 IPR036638 GO:0046983
Vifaun7875g00003 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 149 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7875g00003 7 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.857 4.61e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun7875g00003 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7875g00003 - - psat:127129084 392.889