Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7875g00002 ATGGGATGGAACTTAGAGGAGTTGGAGCCTGGAGAGTCTTTAAATATTAGCAAATTAGATTATTCTTTACCACAATATCATCAATTCTCTTCACTGAAGCAACAACATGTTGAAATTGAAACGCCACCACCATCCCCTAAGCTTATGGTGAAGAAGCTTAACCACAATGCTAGCGAACGTAATCGCCGTAAGAAGGTCAATAACTTGATTTCTGCACTTCGTTCACTTCTTCCAGCTGAAGACCAAATGAAAAAGATGAGTATTCCAGTAACAATTTCAAGAGTTTTAAAATACATACCGGAATTACAAAAGGAGGTTGAAGGACTTACTAAGAAAAAAGAAGAGCTTCTATCAAAAATTTCTAGGCAAGAATATGCAGTCAACAAAGAATCACAAAGGAAAATAATTCCTAATAACTACAACTCTTCTTTTGTTGTTTCAACAAGTAGGCTTAATGATAATGAGCTTGTTATTCATATTTCATCTCATGAGGCTTACAAGATTCAATTATCTGAGATCTTGATGTGTTTGGAAAATAATGGACTCCTTCTACTAAATTCTTCTTCTTCTAAAACATTTGGAGGTAGACTCTTCTACCACTTGCATTTTGAGGTGGAGAAAACTCAGAGTTTAGAGTGTGATGTTCTAATTGAGAAGCTTCTGTTAATATATGAGAAGCAACGATGCATTAATCTTAGTGTTGCAAGATAA 711 0.3488 MGWNLEELEPGESLNISKLDYSLPQYHQFSSLKQQHVEIETPPPSPKLMVKKLNHNASERNRRKKVNNLISALRSLLPAEDQMKKMSIPVTISRVLKYIPELQKEVEGLTKKKEELLSKISRQEYAVNKESQRKIIPNNYNSSFVVSTSRLNDNELVIHISSHEAYKIQLSEILMCLENNGLLLLNSSSSKTFGGRLFYHLHFEVEKTQSLECDVLIEKLLLIYEKQRCINLSVAR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7875g00002 236 Coils Coil 99 119 - -
Vifaun7875g00002 236 SMART finulus 56 108 IPR011598 GO:0046983
Vifaun7875g00002 236 Pfam Helix-loop-helix DNA-binding domain 51 103 IPR011598 GO:0046983
Vifaun7875g00002 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 102 IPR011598 GO:0046983
Vifaun7875g00002 236 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 46 208 - -
Vifaun7875g00002 236 Gene3D - 45 134 IPR036638 GO:0046983
Vifaun7875g00002 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 121 IPR036638 GO:0046983
Vifaun7875g00002 236 FunFam Transcription factor ORG2 46 134 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7875g00002 11 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.982 4.54e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun7875g00002 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7875g00002 - - psat:127129084 352.058