Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7618g00001 ATGGATGAGCTTGTCTGTATTGAAAATCGTCAACCTGATATTTTACTATGGGACAACGAACTCAATGGAAATCCATTAAGGATAATGAACGTGTCTCACTTGGAAGAGTTATCATTTTCGGAAGGGTTAGAGATTGATGAGCCTATGGCCGTCTGGTTCAAGTGGAAAGGGAAGTGGCATGCAGGAATAAAATGTGCAAAAGATGATTTGCCAATGTCCACTCAGAAAGACAAACCAGTTCATGATAATCAGAACAAATATTTGATCGTATTTTCTCCGGATACTAAGAATTATTCTTGGGTTAAAATGCTTTTTGTTCAATCAATTCATGAATTTCCTCAGCCTATAGCATATGAAACTCATCAAGATGGATTGAAAATTGTACAAGACTTGACTATTGCTCGACGCTTTACAATGCAAAACCTCGTTATCGAAATGATCAATATTGTTGAACATATTCACTCTCATGCTTTAATAGAAGATGCTCGCGATGTGAGGTTTTGGAAACAATTTGCTATGGAAGCTTCTCACTGTAAAAGGTATTCAGATCTTGGAAGAATGGTTAAGCGAGTGCAAAAGAGCATTCTGCAACATTATATAATGGCTGATTGGAAACTGCATTGTTCTAAGTCTTGGGTTGATCGATGCGAAAAGGCAAAAAATGCAGAAACAATTGAGCTGCTAAATGAGGATTTGATTGATTCCATTTTGTGGAATGATGTCAGCACTCTCTGGAATAAAGCCCCAGAACCAAAATTAGGTTATGTTTGGAAAACACTTAAGCATGATGTAGTGAAATGGTTTTCAAGAAATCCTTGGATTTCTAGCAGCAACGGCTCGAAGACACATGCTTCAAGTTCTTATGGATTGTGCCAAAAAAGGTTTCAAGTTGGTTTCATAAGGCCTAAACTTCAAATTCGTCGTCAATGCGCACCTTCAACGCATAAAAGTACCGTGGAGGTGCCCGTGGAAACTGAGTTTCCTAGTCAGTTGATGAATGAATTGAGTGATATCGGAGTCGAGGCTGTAGATTCTGATGTCTTGCCCATCGCTGACATGGTATCAAGGCCTATGGAAGATGAAGAAAGGCCTACGGATGATGAAGAAAGGCCTATGGAAGATGAAGAAAGGCCTACGGATGATGAAGAAAGGCCTATGGAAGATGAAGAAAGGCCTACGGATGATGAAGAAAGGCCTATGGATGATGAAGAAAGGCCTACGGATGATGAAGAAAGGCCTATGGATGATGAAGAGGCTATTGAATTATTTGTAGAACCTGATAATACTAAGAGTCAGCAATGCGAAAAGTTTATCGAAGCCAAGGGAAGGCGATGTAGGGGACGAGCAATTGGTAGTGGTAAATATTGTTGTGCTCATTTCTCAAGAAAACCTGCAAAACAAGTTAACTCTCCTACTGCAATGTGTGGAGGTACAACTGCGGCTGGTACTAAATGCAGGCATCATTCACATCCTGGCTTTTCTTTCTGCAGAAAGCATTTGATCAATGTTAAGACAAACAATAGTTCAAATTCGAGACGTCGTAGATCGAAAAGGAAAGCAAAAGTAAACTACTGCGGTTCGACTTCGAAGAGAAGGGTTCGCGAATACTTAGGCGTGGCACCTCTGAAAAGTCCATTGGATATTGATCCGGTATCAATCATCGATGATGATGCTTTCATTGCAAGGAACATCTTAGGAGAAACACTCATGCTTTCTGGTAATGATCACAATGTGGCTCTTGAATGGATAGATTCTCCTCTTAATGGCAATGATACTGATAATGATAATTCAATCAAGTGTAAGGTATGTTTTGAAGAATTTTCTGATGACCAATCACTTTTTAACCATTGGATGGAAAATCATGAAAGGGAAGCATATTGGTTATTCATGAGTTATGCTTGTGCAATTTGTTTTGATTCCTTCACCAACAAGAAACTATTGGAATCACATGTTCAGAATAGACATCATGTGCAGTTCATTGAACACTGCTTGCTTTTGAAATGTAATGCTTGTAGTGGTAACTTTGGAATTATGGATGAATTCTGGTTGCATGTTAAGTCAGTTCACTCTTCAGAATTCAAGGTATCAAAAGCTTCTCCGGAAATGATTGAGCACAGAAATGAAGCTTCTTTGGAAGAACCTCAGCCTAACAATCTCAATACCTTATCGATTGCTTCCACAACTTCCCGTGAAGTTAATCTTGAGACGTTGTTGATGGAGAAATATGGACATTTACCAGAAAGACTTAATTTGAATGCATCAGAAGATTGCAGTGAGAGAGAAGTTATTGAGAATTCGCATCGCAATGAGATTCACCCTGTCGTTAGTCCACACTCATTGCAAAAGGCTATAATTTTATGTGATGACATAAGCTTTGGGAAGGAATCAACTCCAGTGATCTGTGTATTGGATCAAGAAATGCTCAATTCTCTTTTTGAAAAAGAGCGATACCGATACATAAATCTTCCTAGTCCTTGGGAATGTTTTGCATATGTGACAAAACAAATGCTTGATCGATTTCCTAGTCATAATCACGAGGAGAGCCTACAACTGAGATGTTATTGTTCCACTTCAACATGTTGTCGTAAAACGTGTGATCATATATACCTTTTCGATAATGCAAAAGATGTATTCGGGAAACCAATGAGCGGAAAGTTCCCATACAATAAAAATGGTCGACTCATGTTGAAGGAAGGTTATTCGGTGTACGAGTGTAACGATATGTGCAGATGTAGTAAAACCTGTCAGAACAGAATATTGCAGAAGGGAATTCAAGTTAAATTGGAAGTCTTTAAAACAAAGGAAATGGGATGGGGAGTAAGGGCTGGCGAGGACATTTTTCGCGGAACATTCGTGTGTGAGTATATTGGAGAAGTTGTAGAAAAGAAGGAGGTACACAAAAGGCGAGAAAGATACGGAAAAGAAAACTCTGAATATTTCTATGACATTGGTGCTCATGTTAATGACATGAGTGGATTTACAAAAGGACATGCCCGCGGATACGTTATTGATTCTACTAGTTATGGAAATGTCTCTAGATTCATTAATAATAGTTGCTCACCGAATCTTGCTAACTACCAAGTTTTTATAGAGAGCACGAATTGTGAGCATGCACATATTGGTCTTTATGCAAATAGAGATATTGCTTTGGGTGAGGAGTTGACATACAGTAATCACTATGCGTTTGTTGGTGGAGAAGGATATCCTTGTCTTTGTGGATCGTTAAAGTGCAGAAAGAGGATATGCTAA 3249 0.3884 MDELVCIENRQPDILLWDNELNGNPLRIMNVSHLEELSFSEGLEIDEPMAVWFKWKGKWHAGIKCAKDDLPMSTQKDKPVHDNQNKYLIVFSPDTKNYSWVKMLFVQSIHEFPQPIAYETHQDGLKIVQDLTIARRFTMQNLVIEMINIVEHIHSHALIEDARDVRFWKQFAMEASHCKRYSDLGRMVKRVQKSILQHYIMADWKLHCSKSWVDRCEKAKNAETIELLNEDLIDSILWNDVSTLWNKAPEPKLGYVWKTLKHDVVKWFSRNPWISSSNGSKTHASSSYGLCQKRFQVGFIRPKLQIRRQCAPSTHKSTVEVPVETEFPSQLMNELSDIGVEAVDSDVLPIADMVSRPMEDEERPTDDEERPMEDEERPTDDEERPMEDEERPTDDEERPMDDEERPTDDEERPMDDEEAIELFVEPDNTKSQQCEKFIEAKGRRCRGRAIGSGKYCCAHFSRKPAKQVNSPTAMCGGTTAAGTKCRHHSHPGFSFCRKHLINVKTNNSSNSRRRRSKRKAKVNYCGSTSKRRVREYLGVAPLKSPLDIDPVSIIDDDAFIARNILGETLMLSGNDHNVALEWIDSPLNGNDTDNDNSIKCKVCFEEFSDDQSLFNHWMENHEREAYWLFMSYACAICFDSFTNKKLLESHVQNRHHVQFIEHCLLLKCNACSGNFGIMDEFWLHVKSVHSSEFKVSKASPEMIEHRNEASLEEPQPNNLNTLSIASTTSREVNLETLLMEKYGHLPERLNLNASEDCSEREVIENSHRNEIHPVVSPHSLQKAIILCDDISFGKESTPVICVLDQEMLNSLFEKERYRYINLPSPWECFAYVTKQMLDRFPSHNHEESLQLRCYCSTSTCCRKTCDHIYLFDNAKDVFGKPMSGKFPYNKNGRLMLKEGYSVYECNDMCRCSKTCQNRILQKGIQVKLEVFKTKEMGWGVRAGEDIFRGTFVCEYIGEVVEKKEVHKRRERYGKENSEYFYDIGAHVNDMSGFTKGHARGYVIDSTSYGNVSRFINNSCSPNLANYQVFIESTNCEHAHIGLYANRDIALGEELTYSNHYAFVGGEGYPCLCGSLKCRKRIC 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7618g00001 1082 Pfam SET domain 937 1057 IPR001214 GO:0005515
Vifaun7618g00001 1082 ProSiteProfiles Zinc finger C2H2 type domain profile. 632 655 IPR013087 -
Vifaun7618g00001 1082 SMART c2h2final6 666 689 IPR013087 -
Vifaun7618g00001 1082 SMART c2h2final6 632 655 IPR013087 -
Vifaun7618g00001 1082 SMART c2h2final6 598 621 IPR013087 -
Vifaun7618g00001 1082 Pfam Pre-SET motif 791 918 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifaun7618g00001 1082 Pfam Zinc finger C2H2-type, 3 repeats 634 723 IPR040689 -
Vifaun7618g00001 1082 ProSiteProfiles Pre-SET domain profile. 851 923 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifaun7618g00001 1082 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 776 1082 - -
Vifaun7618g00001 1082 SMART set_7 926 1067 IPR001214 GO:0005515
Vifaun7618g00001 1082 SUPERFAMILY SET domain 775 1072 IPR046341 -
Vifaun7618g00001 1082 ProSitePatterns Zinc finger C2H2 type domain signature. 600 621 IPR013087 -
Vifaun7618g00001 1082 SMART preset_2 787 910 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifaun7618g00001 1082 Gene3D Classic Zinc Finger 584 658 - -
Vifaun7618g00001 1082 ProSiteProfiles Zinc finger C2H2 type domain profile. 666 694 IPR013087 -
Vifaun7618g00001 1082 MobiDBLite consensus disorder prediction 364 414 - -
Vifaun7618g00001 1082 MobiDBLite consensus disorder prediction 349 414 - -
Vifaun7618g00001 1082 ProSiteProfiles SET domain profile. 926 1059 IPR001214 GO:0005515
Vifaun7618g00001 1082 ProSiteProfiles Post-SET domain profile. 1066 1082 IPR003616 -
Vifaun7618g00001 1082 Gene3D SET domain 779 1081 IPR046341 -
Vifaun7618g00001 1082 ProSitePatterns Zinc finger C2H2 type domain signature. 668 689 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7618g00001 627 701 C2H2 Transcription Factor Family AT2G23740 50.667 9.25e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifaun7618g00001 Pre-SET 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7618g00001 - - psat:127136654 1122.84