LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun7500g00001	ATGGATATGTTTACTAGAAACAACTCTTGTTCTTCCTGTGACACTTCACTGCAGAATTCAGATGGCTCTCACTGGATGTCAATTTCCAACGATGAAATACGGTTAGCTGCAACTACCCCGAAGAAGCCTGCAGGGAGAAAAAAGTTCAAGGAGACTCGCCATCCGGTGTATAGGGGAATAAGGAAAAGAAACAATGATAAATGGGTATGTGAAATGAGGGAGCCGTTCAAGAAGACTAAAATTTGGTTAGGTACTTTCCCGACAGCCGAGATGGCTGCACGAGCGCACGATGTTGCTGCATTGGCATTAAGGGGCCGTTACGCCTGTCTCAATTTCGCAGACTCAACTTGGCGCCTCCCTAAACCAGCTACTAAAGAGGTAAAAGATATACAAAAGGCCGCTGCAGAAGCCGCTAAGGCTTTCGGACCAGATCAAACTTTACCGATTAATGATGTTGACACGGCTTTAACGGCTAATGATGTTGACACGGCTGTAGCTGCCTCTGCTACTGAAGAGCAGAATATGTTTTCTATGGAAGTGGAAGAAGAGGGAATGATGAACACGCCAGAAATGTGGAGGAATATGGCACTAATGTCTCCAACACATAATTTTGGGTATCATGATGAATATCAATATATTGATGAACAAGACTATCAAGACCAAGAGATATCACTATGGACTTTTTAA	687	0.4352	MDMFTRNNSCSSCDTSLQNSDGSHWMSISNDEIRLAATTPKKPAGRKKFKETRHPVYRGIRKRNNDKWVCEMREPFKKTKIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSTWRLPKPATKEVKDIQKAAAEAAKAFGPDQTLPINDVDTALTANDVDTAVAASATEEQNMFSMEVEEEGMMNTPEMWRNMALMSPTHNFGYHDEYQYIDEQDYQDQEISLWTF	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun7500g00001	228	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vifaun7500g00001	228	PRINTS	Ethylene responsive element binding protein signature	57	68	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	PRINTS	Ethylene responsive element binding protein signature	79	95	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	ProSiteProfiles	AP2/ERF domain profile.	56	113	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	FunFam	Ethylene-responsive transcription factor 2	55	114	-	-
	Vifaun7500g00001	228	Gene3D	AP2/ERF domain	56	114	IPR036955	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	CDD	AP2	57	115	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	SUPERFAMILY	DNA-binding domain	56	115	IPR016177	GO:0003677
	Vifaun7500g00001	228	SMART	rav1_2	56	119	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	Pfam	AP2 domain	55	105	IPR001471	GO:0003700\|GO:0006355
	Vifaun7500g00001	228	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	3	227	IPR045277	GO:0003700

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun7500g00001	34	228	AP2-EREBP Transcription Factor Family	AT4G25470	51.759	7.37e-62	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vifaun7500g00001		AP2	2.8e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun7500g00001	-		-	mtr:25497250	284.263