Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7491g00002 ATGGAACTCACCAACGACAAATTTTCCATCCCAACCCCAGCTTCTACTTCAACTTCATCATCAAGACTCGCCGACCTTGTCTCCGACCAGTTTCCGGCGGGTCTCAGAGTACTTGTTGTCGATGATGACCCCACCTGTCTTATGATCCTTGAGAGGATGCTCCGGTTTTGCCTCTATCAAGTTACAAAATGTAAGAGGGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAATGGGTTTGACATTGTTTTAAGCGACGTGCATATGCCTGACATGGATGGGTTCAAGCTTTTAGAACATATTGGATTGGAGATGGATCTTCCGGTTATTATGATGTCGGCTGATGATGGAAAGAATGTGGTAATGAAAGGTGTGAAACATGGTGCTTGTGATTATCTGATCAAACCGGTGAGAATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAAGAATCAGTGGAAAGATCTGAAGCAATCTGGTGGTGGGTTAGATGAAGGAGATCGGCAACAAAAGGTGTCTGGTGATGTTGATTACTCATCTTCTGCGAATGAAGGCAAGAGCTCGAGGAAGAGGAGGGATGAGGAAGATGAAGCAGATGAGAGGGATGATTGTTCCACGATGAAGAAGCCGCGAGTTGTTTGGTCTATTGAGTTGCATCAACAGTTCATGGCTGTTGTGAATCAAGTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCCGGGCTCACTAGGGAAAACGTTGCTAGCCATCTTCAGAAATACCGTTTGTACCTTCGAAGGTTGAGTGGAGTTTCGCAACAGCAGAGTAACTTGAACAATCCCTTCATGAGTCCACAAGAGTCAATATTTGCGTCAACGTCAATAAATGGAATTGATCTTCAAACTCTTTCACCTGCTGGCCAGCTCTCGAATCCAAGTCTAGCCAAGCTTCAAGCAGCTGGACTTTTCAGTTCTGAGAACTTAAAACTAAGATTTGGAGAAGGGCAACTGCAACATATGAGCAGCAATAAACCAATGAACTTTCTTCACGGAATCCCTACCAACATGGAACCAAAGCAGTTTGCCAATTTGCACCAGTCTATTCAATCGTTTGGCAGCACGAATACACGAGTCAATGCTTCTGCTACTCCGAGAAGCCCCTGGTTGATGCAGATGGCTCATTCTCAACCTAGACGTCAGATGCTAAATGAGAATACCAATTCTCAAGCTACAAGGTTTCCGTCATCTTTGGGGCAGCCTACAGGACCAATTGGTGTTTCAAATGGTTTTGTAGGAAATGTGATCGCTGATACACGCAACATAACTTATCCCTATAATTCAGTTGCACAAGGTAACTTTGACGCCTCACCTTCAAATTTAGGCCATTGTGGTTTTTCCTCTATCCAACACGCTGGACAAAATAGAGATGCTAGTTTAATTGGAAAATCTTTGATCAACACTGGTGATGGTATGAGTCAAGGAAATCTCCAAAATGTTGGTCAACACCTGAATACGCTACTTGTTGACAATTCATTAAGGGTTAAAAGTGAAAGAATTCCTAATCCAAGCTTCGAGATTAACCCTTTCTCTGAGCAATTCGGCCAAGAGGATCTCATGAGTGCGTTTCTGAATCAGCACCAAGGCGTTGGTCACGTTGGAAATGAGTTTGACTTGGATGGATATTCGCTAGACAACATTCCGGTCTATAACAGATCCTGTTAG 1734 0.4319 MELTNDKFSIPTPASTSTSSSRLADLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYQVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVKHGACDYLIKPVRIEALKNIWQHVVRKRKNQWKDLKQSGGGLDEGDRQQKVSGDVDYSSSANEGKSSRKRRDEEDEADERDDCSTMKKPRVVWSIELHQQFMAVVNQVGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNPFMSPQESIFASTSINGIDLQTLSPAGQLSNPSLAKLQAAGLFSSENLKLRFGEGQLQHMSSNKPMNFLHGIPTNMEPKQFANLHQSIQSFGSTNTRVNASATPRSPWLMQMAHSQPRRQMLNENTNSQATRFPSSLGQPTGPIGVSNGFVGNVIADTRNITYPYNSVAQGNFDASPSNLGHCGFSSIQHAGQNRDASLIGKSLINTGDGMSQGNLQNVGQHLNTLLVDNSLRVKSERIPNPSFEINPFSEQFGQEDLMSAFLNQHQGVGHVGNEFDLDGYSLDNIPVYNRSC 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7491g00002 577 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Vifaun7491g00002 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 270 IPR017930 -
Vifaun7491g00002 577 Gene3D - 35 165 - -
Vifaun7491g00002 577 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Vifaun7491g00002 577 SUPERFAMILY CheY-like 34 157 IPR011006 -
Vifaun7491g00002 577 MobiDBLite consensus disorder prediction 189 210 - -
Vifaun7491g00002 577 MobiDBLite consensus disorder prediction 161 177 - -
Vifaun7491g00002 577 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Vifaun7491g00002 577 MobiDBLite consensus disorder prediction 1 21 - -
Vifaun7491g00002 577 MobiDBLite consensus disorder prediction 161 210 - -
Vifaun7491g00002 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 348 IPR045279 GO:0009736
Vifaun7491g00002 577 FunFam Two-component response regulator 35 172 - -
Vifaun7491g00002 577 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Vifaun7491g00002 577 PIRSF RR_ARR_type-B 14 550 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifaun7491g00002 577 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Vifaun7491g00002 577 CDD REC_typeB_ARR-like 37 151 - -
Vifaun7491g00002 577 SMART REC_2 35 147 IPR001789 GO:0000160
Vifaun7491g00002 577 Gene3D - 211 273 - -
Vifaun7491g00002 577 FunFam Two-component response regulator 210 273 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7491g00002 515 572 Response Regulator Gene Family AT3G16857 54.237 2.81e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifaun7491g00002 Response_reg 2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7491g00002 - K14491 tpra:123885541 825.469