Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7343g00004 ATGGCAAAACCAGGGGTGTTGGATTCTGATCCAGAGATTATGGTGAAGAAAGTTTTGGAGATGAAGAAGGAGTTAAAGAAGCTTGTGAAGTCCATTGTTGAGGATGAAGATACAAGCATTGAAGCTATTGATAAAGCTAAGGAAACTCTTTGTGTTCTTAAGGATTTGAAGCTTAGAAAGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCTAAAGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGACTATTCATTCAAAAGTGGTTGAATGCTGGAAATAGGACATGCCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCATCTTGTAAGAGAAATGATAGAAAAATGGTCTAAAAATCAAGGGATTGAATTGTGCAATATTATTAGTTATATCAATGGTGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCATCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGATTGTTGACAAAGAAGCATCCTTGTTTTAGAGTACTTTTTTGTGATTTCGAAGATGCAATTCCTCAATTGCTTAAGCCTATTTGTGAAGGAAATAGTATTAACCATGATCTTCAAGAAGACGTGATCACGACACTTCTCAATATCTCGATTCATGACAACAATAAGAAACAAGTAGCCGAAACTCCAATGGTGATTCATCTCCTTATGAAGTCATTGAGATGTGGAACAATCGAGACACGAGCCAATGCTGCAGCAACCCTTTTCACGTTATCAGCACTAGACTCAAACAAAGAACTTATAGGAAAATCGAACGCCTTGAAACCGCTTATCGACCTAATGGAAGAAGGGAATACCTTAACTATGAAAGATGTTGCTTCAGCAATATTCACTTTATGTATGATGCATGACAACAAGGCAAGAGCAGTGAAAGACGGTGCGGTTAGAGTGATTATGACGAAGATGAAAAATCGACTTCATGTTGACGAATTACTAGCTATTCTTGCGCTACTTTCAACTCATCAGAAAGCTGTTCTTGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGTATCATGCGAGAGAGCTCGTGCGAGCGCAATAAGGAGAATTGCGTTGCGATTCTTCAAACTATATGTCTATATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAAGAGAATAGCTATAGAACAATTTCTGAACTTGCAAAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATCACACACACTGCATGA 1374 0.3755 MAKPGVLDSDPEIMVKKVLEMKKELKKLVKSIVEDEDTSIEAIDKAKETLCVLKDLKLRKKSQSSMSFKINKNVTFPDEFKCPLSKELMRDPVIVASGQTYDRLFIQKWLNAGNRTCPQTHQVLSHTLLTPNHLVREMIEKWSKNQGIELCNIISYINGEGAKEADQNHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFEDAIPQLLKPICEGNSINHDLQEDVITTLLNISIHDNNKKQVAETPMVIHLLMKSLRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLMEEGNTLTMKDVASAIFTLCMMHDNKARAVKDGAVRVIMTKMKNRLHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSYRTISELAKNGTSRAKRKASGILERLHRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7343g00004 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vifaun7343g00004 457 SUPERFAMILY ARM repeat 181 447 IPR016024 -
Vifaun7343g00004 457 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Vifaun7343g00004 457 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Vifaun7343g00004 457 FunFam RING-type E3 ubiquitin transferase 352 453 - -
Vifaun7343g00004 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vifaun7343g00004 457 SUPERFAMILY RING/U-box 75 153 - -
Vifaun7343g00004 457 CDD RING-Ubox_PUB 77 129 IPR045210 -
Vifaun7343g00004 457 PANTHER U BOX DOMAIN-CONTAINING 42 446 - -
Vifaun7343g00004 457 Gene3D - 152 452 IPR011989 -
Vifaun7343g00004 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7343g00004 138 457 U-box Gene Family AT3G07360 58.716 2.84e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7343g00004 - - gmx:100777031 693.345