Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7152g00001 ATGGCTAACGCGGATGAAGTTTCAGCTCTTAAACGTATCAAACTGCATCTTCTGGGTGAATTTTCACCACTTCCATCTCCAATTTCACAACCTTGGAGTTTCGATTTTGATTTTCAGTTTCAAACCAACCAAACCAATCACGATTCTTCAATCTCTTTGGATCATTATTTCACTGATCTCCTTCAAACAGACACAGAAATTCCGACCTTTGAATTTGACTTCAAACCTCAAACAACTCAACCTGAGAGCCCTAAAACTTTATCATCTCATCCTCAGAATCCTCAACTGAAGAGAAAACCATCTCTGGAAATCGCTCTCCCGAACAAAACCGAATGGATCCAATTCAGAAAACCGGATCCGAAACCGGAATTGGTTGTACAGAAGCCGGAAGTTGCTGAGAAACAGCACTACAGAGGCGTTAGACAGAGACCATGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAACGCGGCTCGAGACTGTGGCTTGGAACTTTTGAAACTGCTATCGAAGCCGCTAAAGCCTACGATCGTGCCGCTTTTAGGCTTCGTGGATCTAAAGCGATTCTCAACTTTCCGCTAGAAGTCAACGCCATGGCGGCGGCGGAGTCGGTGGTGGTGGAGAACGCCGGCGACAACAAAAAACGTTGCCGTGAAGAGGAAGATGATGATGTGGTGGAGGTGAAAAAGGAGAAAACGATGGAATTTGATGTGAACTGTGTTAAAGAGACGCCGTTAACTCCGTCAACTTGGACTGGGTTTTGGGACGTTGATGTTAAGGGGAGTTTCAGCGTTCCACCGTGCTCGCCGTTACCTTCCTTTTGTTTTTCACCTCTAGTGCTTGTGTGA 852 0.466 MANADEVSALKRIKLHLLGEFSPLPSPISQPWSFDFDFQFQTNQTNHDSSISLDHYFTDLLQTDTEIPTFEFDFKPQTTQPESPKTLSSHPQNPQLKRKPSLEIALPNKTEWIQFRKPDPKPELVVQKPEVAEKQHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAAAESVVVENAGDNKKRCREEEDDDVVEVKKEKTMEFDVNCVKETPLTPSTWTGFWDVDVKGSFSVPPCSPLPSFCFSPLVLV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7152g00001 283 MobiDBLite consensus disorder prediction 75 96 - -
Vifaun7152g00001 283 SUPERFAMILY DNA-binding domain 136 196 IPR016177 GO:0003677
Vifaun7152g00001 283 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Vifaun7152g00001 283 PANTHER DNA-BINDING DOMAIN 97 213 IPR044808 GO:0003700|GO:0009873
Vifaun7152g00001 283 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 MobiDBLite consensus disorder prediction 75 99 - -
Vifaun7152g00001 283 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 PRINTS Ethylene responsive element binding protein signature 176 196 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Vifaun7152g00001 283 FunFam Ethylene-responsive transcription factor 2 135 196 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7152g00001 1 283 AP2-EREBP Transcription Factor Family AT5G47230 42.547 7.02e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifaun7152g00001 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7152g00001 K09286 - gmx:100800453 307.375