Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun7045g00001 ATGTCTGGAGAATCCGCCACCGCTATTCACAAGGGTCAAGTTGATCTCTTAGGCTTCATAGATTGGATTGGTGTTGAATGCCTCAATCAAAGCACCACTCTCTCTGTTTCCAGTGCTATCAAACGGGGTTATAGAGAAGATAAAGGTTTTCATCTAGAAATTGATGCATATGAACAGTTTTTGCTTTATATTGCTTTCACCCAAGTTATTAAACTTTATTCCATTATTGTCAAAGGTCCTGAAGATAAAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGACGGATTCAAAGTTTCCACAGCACAGGTGCTTGTGATAGGTGCTACAAATAGATTGGATATTATTGATCCTGCTCTTTTGTGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTGCCTTTAAGAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTATGAATAAGTATTTTCGCTTAGAAGAAGAAAAAGATACTCTGCTTAACGAAATTGTAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAGAATATACTGAACGAAGCTGGAATTTTAACGGCCAGGAAGGATTTGGATTATATTGGGCGTGACGAGTTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGACACTACAGAAATTCCTGAAGAACTGAGACTGAGATTGGCATATAGAGAAGATATGGAAACTAGTAAAATACCCGTGCTCCTTCACCGTGTATCATTGGTCTTTTTGAAACAGCTAGAAATCCAAACAGAAATGATATTTGCTACAGACTCACAAATGCATCCCAACTACGCAAGTGATAATGCGACTGATATAAGTTCTATTTGCAGCCAGCCAAATATGTCTTATAGTGAAGTTTCTGGAAAGGTTTTTTCTAGAAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGACTTTCGGGATAGACAACTTGTGTTGGATGTCTGCAAATGCTTGTTTAACCATATCTGCGTTTTGTAGGCTCTGTTGCGGTGCTACTTTTATGTTTGCTGTCTGTTTTGCTCAAATGGTTTATGGTTCTTGTAGACGTCTACTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGTCGGAAGTTTTTGGATATAATGCTTGTAATACCTCCACCAAGAACAAGGATATAGAGGATCATTGGAAAGGCATTTGGAATCTGAGTGTTACTAAAAGAATAAGGGTTTTTGTGTGGATGATATATCATAATGGAATCAAAACCAACCAATATCTAAACCACTTGAATCTTCCAGATAATTTGTGTGATTACTGTGATGGAAAATGTAGTAGTGTTGTAGCTGAGCTTTGGTGA 1506 0.3951 MSGESATAIHKGQVDLLGFIDWIGVECLNQSTTLSVSSAIKRGYREDKGFHLEIDAYEQFLLYIAFTQVIKLYSIIVKGPEDKGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDIIDPALLWKGRFDKIIRVGLPLRDGRLAILKVHAMNKYFRLEEEKDTLLNEIVELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDTTEIPEELRLRLAYREDMETSKIPVLLHRVSLVFLKQLEIQTEMIFATDSQMHPNYASDNATDISSICSQPNMSYSEVSGKVFSRKSDYINSIVRSCAPRVIEEETFGIDNLCWMSANACLTISAFCRLCCGATFMFAVCFAQMVYGSCRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGSEVFGYNACNTSTKNKDIEDHWKGIWNLSVTKRIRVFVWMIYHNGIKTNQYLNHLNLPDNLCDYCDGKCSSVVAELW 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun7045g00001 501 Pfam zinc-binding in reverse transcriptase 434 491 IPR026960 -
Vifaun7045g00001 501 Pfam LSD1 zinc finger 396 420 IPR005735 -
Vifaun7045g00001 501 NCBIfam zinc finger domain, LSD1 subclass 367 382 IPR005735 -
Vifaun7045g00001 501 NCBIfam zinc finger domain, LSD1 subclass 393 421 IPR005735 -
Vifaun7045g00001 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 222 IPR027417 -
Vifaun7045g00001 501 Pfam ATPase family associated with various cellular activities (AAA) 82 138 IPR003959 GO:0005524|GO:0016887
Vifaun7045g00001 501 Pfam AAA+ lid domain 168 208 IPR041569 -
Vifaun7045g00001 501 Gene3D - 140 216 - -
Vifaun7045g00001 501 Gene3D PITH domain 2 98 IPR037047 -
Vifaun7045g00001 501 Pfam PITH domain 16 82 IPR010400 -
Vifaun7045g00001 501 ProSiteProfiles PITH domain profile. 5 196 IPR010400 -
Vifaun7045g00001 501 PANTHER METALLOPROTEASE M41 FTSH 82 342 - -
Vifaun7045g00001 501 Coils Coil 157 177 - -
Vifaun7045g00001 501 SUPERFAMILY Galactose-binding domain-like 6 83 IPR008979 -
Vifaun7045g00001 501 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 140 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun7045g00001 87 213 Miscellaneous Gene Families AT3G47060 45.669 4.14e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifaun7045g00001 zf-RVT 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun7045g00001 - - cpap:110824568 363.999