Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6999g00003 ATGGCGCCAAAAAGAAACCACTCCTCAATCTTCATCGGTAACTGCGAGGTTACGGTCGAAGCCAGCACTTTCACATGCAATTCAACTTCCAACGACCTCTTAATCTCTCTTCCTCAAAGCGGAAATATCAAAGTTTCTGTAGCGGCACAAGATGTTTCTGCGAACCATAAAAACACTTCCGAGTCCGAAAAAACAGAACACGAGTTTGTGCTGCTTAATCCGAAAGATGTTGATGATATTAGCAAGTCCTACCTCCAGGAAGTGTTACAGATGTTTATGACAGAGCTACCTGGAATGAATTATGCTGCAAATACCGGGAAACAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTAGTTCTAAAATCCAGTTTGGCTAGAGATTCAGGAAAGGTTATAGCTGCGATTAGTTATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCATCTATTGTTTCTAGAGCTGAAGAAGAGACTTCAAAATGTTGGCATTCACTCTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAGCAGGGTTTTTCATCAATAGCAGAGGTGGATACCAGAGGTAGAGCCCGCAGGTTACCTATAAAAGCTGATATTCGCAGAACATTATGCTTACCTGGTGGTTCAACACTGATGGTTTGCCACTTAAAGAAGGAATTGCTAGGTGACGAAGCTAACTCTGGGAAGCGTCTCCTCTCACAGCCTCATCAGAACTCATCTCCACCTGCAATTATTGAAAATGAGCAGTGTGAAGTTTCAGATGAGCTACTCATTGATTTTATATCTTCCCTTAGAAGAGACACCGCTCAAAGTAAACCTAAGGCTTTGGCAAAAGACAGATCTTCACGGGGACATGGAAAACTCAGTGGCCACAATTCTAAGAGCTGCTGCAATGACACTGTTCCTTCTAACACAACAAATTGTTCTCAATCTACAAAAGTTAAGAAGAGGGCATGGGAAGCCTCTTTATCCTCTTTGAAGTCAAAGAAAGTGAAGGGAAGCCAGTTAGTTGACTGTCAATCAGATTCTAGCTGGGGTTTTGTCTCTGAGGCTGACAGGGCAAATCCTTGTTATGTGGAAGTTTCTCATGGTGATACTTTAATTACAAAGAAGTCTGAAAAATGTATTGGAGACCATATACATTTCAAAGCTCCAATCAACCTAAAGCCGCCATCAACTAAACAATGCTTTAGAATCATGTTGATGAATATCAATGATGAAGCTAAGAAAACACAGCTTGCAAAGGTGATTGAAGACCTTGGTGGAACTGTTGCCGCTGATGGAAGCTCAACCACACATGTTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACCGCTCTATGTTCAGGTGCTTGGGTGGTCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGCAGGCAGATTTGTTGATGAATCTCCTCACATACTGAATGATGAGGATTATTTGTTGAAGTACAGATTGGATTTAAGAAGTGCAGTATTCCGAGCAAAAGCTCGTCCCCATGCTTTATTTAAGGGGTACAATATTTGTATTGCAGCTAATGTTCAAACTCCTGCAGAAACTCTGTCTGCTATTGTTAGCTCTGCTGGTGGTAATGTTATTAGTGGACTTGAAAAAGTAAATGAAGTATCAACAACGATCTTTGTGACATGTGAAGAAGATATAAAAGAAGCAATGCTGGCTTCAAAGAAAGGTATAAGAACCTTCAATAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAAGCCCCTCAATTTGTAGAGTCCTTATAA 1875 0.4069 MAPKRNHSSIFIGNCEVTVEASTFTCNSTSNDLLISLPQSGNIKVSVAAQDVSANHKNTSESEKTEHEFVLLNPKDVDDISKSYLQEVLQMFMTELPGMNYAANTGKQSKFLERCVTNGKYRTLVLKSSLARDSGKVIAAISYQIIPADTEYAEIPLAAVNAIYQRKGFGHLLFLELKKRLQNVGIHSIFCWGDKESEGFWLKQGFSSIAEVDTRGRARRLPIKADIRRTLCLPGGSTLMVCHLKKELLGDEANSGKRLLSQPHQNSSPPAIIENEQCEVSDELLIDFISSLRRDTAQSKPKALAKDRSSRGHGKLSGHNSKSCCNDTVPSNTTNCSQSTKVKKRAWEASLSSLKSKKVKGSQLVDCQSDSSWGFVSEADRANPCYVEVSHGDTLITKKSEKCIGDHIHFKAPINLKPPSTKQCFRIMLMNINDEAKKTQLAKVIEDLGGTVAADGSSTTHVVTGKVRKTLNFCTALCSGAWVVSSSWLKESFRAGRFVDESPHILNDEDYLLKYRLDLRSAVFRAKARPHALFKGYNICIAANVQTPAETLSAIVSSAGGNVISGLEKVNEVSTTIFVTCEEDIKEAMLASKKGIRTFNSEWFMNCVMRQELDLEAPQFVESL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6999g00003 624 CDD NAT_SF 130 192 - -
Vifaun6999g00003 624 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 75 226 IPR000182 GO:0016747
Vifaun6999g00003 624 SMART BRCT_7 419 496 IPR001357 -
Vifaun6999g00003 624 SMART BRCT_7 531 611 IPR001357 -
Vifaun6999g00003 624 Pfam BRCA1 C Terminus (BRCT) domain 532 608 IPR001357 -
Vifaun6999g00003 624 Pfam BRCA1 C Terminus (BRCT) domain 434 493 IPR001357 -
Vifaun6999g00003 624 ProSiteProfiles BRCT domain profile. 427 506 IPR001357 -
Vifaun6999g00003 624 CDD BRCT_PAXIP1_rpt6_like 533 614 - -
Vifaun6999g00003 624 Pfam Acetyltransferase (GNAT) family 131 206 IPR000182 GO:0016747
Vifaun6999g00003 624 Gene3D - 66 225 - -
Vifaun6999g00003 624 ProSiteProfiles BRCT domain profile. 529 613 IPR001357 -
Vifaun6999g00003 624 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 58 265 - -
Vifaun6999g00003 624 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 70 213 IPR016181 -
Vifaun6999g00003 624 MobiDBLite consensus disorder prediction 299 314 - -
Vifaun6999g00003 624 Gene3D BRCT domain 531 623 IPR036420 -
Vifaun6999g00003 624 SUPERFAMILY BRCT domain 426 508 IPR036420 -
Vifaun6999g00003 624 SUPERFAMILY BRCT domain 529 614 IPR036420 -
Vifaun6999g00003 624 Gene3D BRCT domain 415 530 IPR036420 -
Vifaun6999g00003 624 MobiDBLite consensus disorder prediction 299 323 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vifaun6999g00003 BRCT 0.00026 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6999g00003 - - psat:127126386 1117.06