Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6999g00002 ATGGCGCCAAAAAGAAACCACTCCTCAATCTTCATCGGTAACTGCGAGGTTACGGTCGAAGCCAGCACTTTCACATGCAATTCAACTTCCAACGACCTCTTAATCTCTCTTCCTCAAAGCGGAAATATCAAAGTTTCTGCGGCACAAGATGTTTCTGCGAACCATAAAAACACTTCCGAGTCCGAAAAAACAGAACACGAGTTTGTGCTGCTTAATCCGAAAGATGTTGATGATATTAGCAAGTCCTACCTCCAGGAAGTGTTACAGATGTTTATGACAGAGCTACCTGGAATGAATTATGCTGCAAATACCGGGAAACAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTAGTTCTAAAATCCAGTTTGGCTAGAGATTCAGGAAAGGTTATAGCTGCGATTAGTTATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCATCTATTGTTTCTAGAGCTGAAGAAGAGACTTCAAAATGTTGGCATTCACTCTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAGCAGGGTTTTTCATCAATAGCAGAGGTGGATACCAGAGGTAGAGCCCGCAGGTTACCTATAAAAGCTGATATTCGCAGAACATTATGCTTACCTGGTGGTTCAACACTGATGGTTTGCCACTTAAAGAAGGAATTGCTAGGTGACGAAGCTAACTCTGGGAAGCGTCTCCTCTCACAGCCTCATCAGAACTCATCTCCACCTGCAATTATTGAAAATGAGCAGTGTGAAGTTTCAGATGAGCTACTCATTGATTTTATATCTTCCCTTAGAAGAGACACCGCTCAAAGTAAACCTAAGGCTTTGGCAAAAGACAGATCTTCACGGGGACATGGAAAACTCAGTGGCCACAATTCTAAGAGCTGCTGCAATGACACTGTTCCTTCTAACACAACAAATTGTTCTCAATCTACAAAAGTTAAGAAGAGGGCATGGGAAGCCTCTTTATCCTCTTTGAAGTCAAAGAAAGTGAAGGGAAGCCAGTTAGTTGACTGTCAATCAGATTCTAGCTGGGGTTTTGTCTCTGAGGCTGACAGGGCAAATCCTTGTTATGTGGAAGTTTCTCATGGTGATACTTTAATTACAAAGAAGTCTGAAAAATGTATTGGAGACCATATACATTTCAAAGCTCCAATCAACCTAAAGCCGCCATCAACTAAACAATGCTTTAGAATCATGTTGATGAATATCAATGATGAAGCTAAGAAAACACAGCTTGCAAAGGTGATTGAAGACCTTGGTGGAACTGTTGCCGCTGATGGAAGCTCAACCACACATGTTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACCGCTCTATGTTCAGGTGCTTGGGTGGTCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGCAGGCAGATTTGTTGATGAATCTCCTCACATACTGAATGATGAGGATTATTTGTTGAAGTACAGATTGGATTTAAGAAGTGCAGTATTCCGAGCAAAAGCTCGTCCCCATGCTTTATTTAAGGGGTACAATATTTGTATTGCAGCTAATGTTCAAACTCCTGCAGAAACTCTGTCTGCTATTGTTAGCTCTGCTGGTGGTAATGTTATTAGTGGACTTGAAAAAGTAAATGAAGTATCAACAACGATCTTTGTGACATGTGAAGAAGATATAAAAGAAGCAATGCTGGCTTCAAAGAAAGGTATAAGAACCTTCAATAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAAGCCCCTCAATTTGTAGAGTCCTTATAA 1872 0.4071 MAPKRNHSSIFIGNCEVTVEASTFTCNSTSNDLLISLPQSGNIKVSAAQDVSANHKNTSESEKTEHEFVLLNPKDVDDISKSYLQEVLQMFMTELPGMNYAANTGKQSKFLERCVTNGKYRTLVLKSSLARDSGKVIAAISYQIIPADTEYAEIPLAAVNAIYQRKGFGHLLFLELKKRLQNVGIHSIFCWGDKESEGFWLKQGFSSIAEVDTRGRARRLPIKADIRRTLCLPGGSTLMVCHLKKELLGDEANSGKRLLSQPHQNSSPPAIIENEQCEVSDELLIDFISSLRRDTAQSKPKALAKDRSSRGHGKLSGHNSKSCCNDTVPSNTTNCSQSTKVKKRAWEASLSSLKSKKVKGSQLVDCQSDSSWGFVSEADRANPCYVEVSHGDTLITKKSEKCIGDHIHFKAPINLKPPSTKQCFRIMLMNINDEAKKTQLAKVIEDLGGTVAADGSSTTHVVTGKVRKTLNFCTALCSGAWVVSSSWLKESFRAGRFVDESPHILNDEDYLLKYRLDLRSAVFRAKARPHALFKGYNICIAANVQTPAETLSAIVSSAGGNVISGLEKVNEVSTTIFVTCEEDIKEAMLASKKGIRTFNSEWFMNCVMRQELDLEAPQFVESL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6999g00002 623 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 69 212 IPR016181 -
Vifaun6999g00002 623 SMART BRCT_7 418 495 IPR001357 -
Vifaun6999g00002 623 SMART BRCT_7 530 610 IPR001357 -
Vifaun6999g00002 623 CDD NAT_SF 129 191 - -
Vifaun6999g00002 623 ProSiteProfiles BRCT domain profile. 528 612 IPR001357 -
Vifaun6999g00002 623 MobiDBLite consensus disorder prediction 298 313 - -
Vifaun6999g00002 623 Gene3D BRCT domain 530 622 IPR036420 -
Vifaun6999g00002 623 ProSiteProfiles BRCT domain profile. 426 505 IPR001357 -
Vifaun6999g00002 623 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 48 265 - -
Vifaun6999g00002 623 CDD BRCT_PAXIP1_rpt6_like 532 613 - -
Vifaun6999g00002 623 Pfam Acetyltransferase (GNAT) family 130 205 IPR000182 GO:0016747
Vifaun6999g00002 623 MobiDBLite consensus disorder prediction 298 322 - -
Vifaun6999g00002 623 SUPERFAMILY BRCT domain 425 507 IPR036420 -
Vifaun6999g00002 623 SUPERFAMILY BRCT domain 528 613 IPR036420 -
Vifaun6999g00002 623 Gene3D - 65 224 - -
Vifaun6999g00002 623 Gene3D BRCT domain 414 529 IPR036420 -
Vifaun6999g00002 623 Pfam BRCA1 C Terminus (BRCT) domain 531 607 IPR001357 -
Vifaun6999g00002 623 Pfam BRCA1 C Terminus (BRCT) domain 433 492 IPR001357 -
Vifaun6999g00002 623 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 74 225 IPR000182 GO:0016747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vifaun6999g00002 BRCT 0.00026 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6999g00002 - - psat:127126386 1110.9