LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun6976g00001	ATGGCTAAGACTAATTCATGGGTGAGAGGAAAGTGTATTGGTAAGGGCGCGTTTGGCGTTGTGAATATAGCTTATTCAAAACGAGATTCTACAGTTTTCGCTGTGAAGTCTGTTGATACTAAAACAGCGCTTCCGAATCAGTTACAAGCGTTGGAGAATGAGATTGAGATATTGAAACGGTTATCATCTTCTGGTTCTTCTCGTCACGTGATATCTTATCTCGGCGATGATGTCACGTGCGAGGGTGAAGGAACGTCGTCGTTTAAGAATCTTCATTTAGAGTACATGCCAGGTGGCACCGTCGCTGACTTGGGTCGTGCTGACGTGGATGAACGGTTAGTTAGAACTTTCGCGTGGTGTTTGGTTCACGCGCTGAGGGATGTTCACGCGCGTGGAGTTGTTCACTGCGATGTTAAGGGGAAGAATGTTCTCGTTGCCGGTTCCGTTGCTAAGCTCGCTGATTTCGGATCGGCGATGGAGTTTTCATGTGGAGAATGTTTTTCGCCGCGTGGAAGTCCGTTGTGGATGGCACCGGAAGTGATTCGGAGGGAGTATCAAGGACCGGAATCTGACGTGTGGTCGCTTGGATGTACCGTGATTGAGATTTTCTCCGGGAAATCACCGTGGGAGGATCGGGGTTCCGATACACTGAGTCGAATTGGATTTTCCGATGAACTACCGGAGTTTCCTGACGGTTTCTCGGAGCTCGGGAGAGATTTTCTCGAGAAGTGTTTGAGGAGAGATCGGAGCCGGAGATGGAGTTGTGATCAGCTGCTACATCATCCATTTTTGTTATCATGCGATAGTGTGGTGGAATCGTCGCCTCGGTGTGTTTTGGATTGGGTTGACGCGCGATTCACTGAGTCGGAAAACGAGTTCGAAGATATACGGTTGAATTTTGATACAAATTTAGTTAAAAATAGAATTAGTAAATTAGATACTGGTTCCAGGGTAAATTGGGAAACAGAAGATTGGGTGGTGGTGAGGGCAATTTCTTCTGAAGAAGAGTCAGCAACTACAGAGAAAGAAGAGTTTGGGGATGAAGTATCAGGGACAATATCGGAATTGGAGAATGTAGTGAGGGTAGTAGAGGAAATGGAGACAAATTTGGAATGTTCAGATTTTGATGTAAGGGTAAAACGGGAAATGTGGAGGTTGTTGTGGTGGCGTGAGTGTTGTAATCAGTGTGTGTTTATTTTAAAGTTTAGTAGAAATAATTTTGAAACTTTTACTCAAACAAATTTTGAAGCCTAA	1254	0.449	MAKTNSWVRGKCIGKGAFGVVNIAYSKRDSTVFAVKSVDTKTALPNQLQALENEIEILKRLSSSGSSRHVISYLGDDVTCEGEGTSSFKNLHLEYMPGGTVADLGRADVDERLVRTFAWCLVHALRDVHARGVVHCDVKGKNVLVAGSVAKLADFGSAMEFSCGECFSPRGSPLWMAPEVIRREYQGPESDVWSLGCTVIEIFSGKSPWEDRGSDTLSRIGFSDELPEFPDGFSELGRDFLEKCLRRDRSRRWSCDQLLHHPFLLSCDSVVESSPRCVLDWVDARFTESENEFEDIRLNFDTNLVKNRISKLDTGSRVNWETEDWVVVRAISSEEESATTEKEEFGDEVSGTISELENVVRVVEEMETNLECSDFDVRVKREMWRLLWWRECCNQCVFILKFSRNNFETFTQTNFEA	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun6976g00001	417	Pfam	Protein kinase domain	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifaun6976g00001	417	FunFam	Serine threonine protein kinase putative	5	313	-	-
	Vifaun6976g00001	417	SMART	serkin_6	7	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifaun6976g00001	417	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Vifaun6976g00001	417	ProSitePatterns	Protein kinases ATP-binding region signature.	13	36	IPR017441	GO:0005524
	Vifaun6976g00001	417	Coils	Coil	41	61	-	-
	Vifaun6976g00001	417	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	7	343	-	-
	Vifaun6976g00001	417	ProSiteProfiles	Protein kinase domain profile.	7	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifaun6976g00001	417	CDD	STKc_MAPKKK	6	264	-	-
	Vifaun6976g00001	417	Gene3D	Transferase(Phosphotransferase) domain 1	3	341	-	-
	Vifaun6976g00001	417	SUPERFAMILY	Protein kinase-like (PK-like)	4	287	IPR011009	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun6976g00001	7	341	MAP Kinase Kinase Kinase	AT1G07150	56.598	3.06e-123	364

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vifaun6976g00001		Pkinase	3.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun6976g00001	-		-	tpra:123921217	554.673