Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6873g00001 ATGAAGTTCTCTTTTTCTGGTTGTTTATTCTCATGTTCTACTGAAGTTAACAATAATGATTTTGGTGATCAAGAGATTAATGATGGAAGCTTTCGTGTATTCACTTATCAACAGTTGAAATCTGCTACTGGTAATTTCAGTGACAAAATTGGACAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTTAAGGATGGATCTTTTGTTGCTGTGAAAGTGCTTTCTATTGAGATTGAATCCATGAGAGGAGAGAAGGAATTTGTTGCGGAATTGGCTACACTAGCAAATATGAAGCATCGTAATCTTGTTAGTCTTAAAGGTTGTTGTGTTGAAGGAGCAAAAAGATATTTAGTTTATGATTACATGGAGAATAATAGCCTCCACTACACTTTCTTAGGTTCAGAGGATAAAAGGGAGAGATTCAGTTGGGAAGAAAGGAAGAGTATATCAATTGGCGTGGCAAGTGGGCTTTCCTATCTCCATGAGGAGTTGAAGCCTCCTATAGTGCATAGAGACATCAAAGCTAAGAATATACTAATTGACAGAAGTTTTACACCGAAACTTGCGGATTTTGGTTTGGCGAAACTAATGAGAGATGAAAAATCTTACATTAGCACTAGAGTTGCAGGGACATTGGGTTATTTGGCTCCAGAGTATGCTAGTTCTGGACAACTAAGAAGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTTTTACAAGTTTTCACGGGCTTGGATGTTGTAGATGCTTATAAAGATATCGAACGTTTCATTGTAGAAAAGGCTTATGCAGCTTATGACGCCAATGATCTGTTAAGAATTGTGGATCCTGTGCTCAATAGAAACTATTCTGAAAAAGAAGCCATCAAATTCCTCAAAGTTGGATTACTTTGCGTGCAAGAAACCGCAAGATTGCGGCCACGAATGTCAGAGGTTGTAGAAATATTGACCAATAACAATATTGATCTAAAAGATGTTCAGATTTCAAAACCAGGATTTGTTGCTGATCTCAGAAACATCAGAATAAAACAGAACATGACAACAAGCTTGCCACAAGAATCGAGCTCTTCGGGAGCAACCTTTGCAAGCTCCATTTGGAGTGTGGGAAATCTCGCCCGTTAA 1122 0.3815 MKFSFSGCLFSCSTEVNNNDFGDQEINDGSFRVFTYQQLKSATGNFSDKIGQGGFGSVYKGRLKDGSFVAVKVLSIEIESMRGEKEFVAELATLANMKHRNLVSLKGCCVEGAKRYLVYDYMENNSLHYTFLGSEDKRERFSWEERKSISIGVASGLSYLHEELKPPIVHRDIKAKNILIDRSFTPKLADFGLAKLMRDEKSYISTRVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQVFTGLDVVDAYKDIERFIVEKAYAAYDANDLLRIVDPVLNRNYSEKEAIKFLKVGLLCVQETARLRPRMSEVVEILTNNNIDLKDVQISKPGFVADLRNIRIKQNMTTSLPQESSSSGATFASSIWSVGNLAR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6873g00001 373 FunFam serine/threonine-protein kinase PBS1-like 13 121 - -
Vifaun6873g00001 373 CDD STKc_IRAK 50 318 - -
Vifaun6873g00001 373 SMART serkin_6 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6873g00001 373 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vifaun6873g00001 373 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 122 325 - -
Vifaun6873g00001 373 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vifaun6873g00001 373 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Vifaun6873g00001 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vifaun6873g00001 373 Pfam Protein kinase domain 47 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6873g00001 373 ProSiteProfiles Protein kinase domain profile. 44 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6873g00001 373 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 356 - -
Vifaun6873g00001 373 SUPERFAMILY Protein kinase-like (PK-like) 30 350 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6873g00001 34 316 Receptor kinase-like Gene Family AT1G53430 49.826 1.66e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifaun6873g00001 Pkinase 9.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6873g00001 - - gmx:100813945 545.043