Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6859g00005 ATGGAAAAACATCAAACTCAAGAACTCAAACACTCTTGCAAATTTTGCAACAAAAGTTTCCCTTGTGGTAGATCCTTAGGAGGTCACATGAGGTCTCATATAAACAACTCATCAGCATCATCTGAAAAAACAGGACAGAAAGAAAAGCTTGATCCAATCAACAATGGTTGCATTGGTTCTGAAAACAATGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAAACATGGAGAAAGAGAATTGCAGATTCAAGTGAACAAGGTTTGGTGTATGACAAGTTGTGCAAAGAGTGTGGAAAGTGTTTTCAATCTTGGAAAGCTTTGTTTGGTCACATGAAGTGTCATTCAGAGAAAGAAAGAGTTTGCAACAGCTTGGAGGATCAAGATTCATGGACGAATGACGCCAAAGATGTCCATTCGGATAACGAAATCACTGCGCCGAGTAGAAAAAGAAGATCAAAGAGAACAAGAACAAGGTATAATAGCGTAGTAGTAGCTGCTGCTGCTGCTGCAACTTGTTCTTCTGTTTCTGAAGTTGAACAAGAGCAAGAAGAAGTTGCTATGAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTAGCTGAATCTTCGGATAACAATTCTCGATCTTCTGTTCGAACTAATCTTGTTACTAAATTCAATGCTAGTGCTAGTACTAGTACTATGAATATTGCCAAGTTGATGAAGCATAAGAGATTCCACTTGAAAGAGGATACTGAAAGAGGAATTAAGATGAAATCTACGAAATTTGAGCTTGATTATGTGTCAAGAATGGATGATTCAGAAGGTGAGAATGGGAAAAACATAGTGAATGGAACAGAATTGGTTACTATGGGAAAATTCGAGTGTACTACTTGCAACAAAATGTTTCATTCATATCAAGCTCTTGGAGGTCATAGAGCGAGTCATAAAAAGAACAAAGGATGTTTCGCTTCAAATGATCTATCTGGTGAACCAACAACCGAAAGCAAGATCATGAAGATTATTCATAATCATAACAACAATGAAGATATTCAAAACATGAAGATCAAAGGTCATCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAGAGATCTCATATGGTTGTTGCTTCTTCTTCTGGCGCTGGTTCTGAGACTAGAGTTCCACAGATTAGAGACTTTCTTGATCTTAATCTACCTGCTGCTACTGAGGAAGGAACTAGTAGTCATGCTGATTCTAACAGACCTTGGTGGATACTTGAAAGTAACCATAAACAAGAGGCACTTGTAGGATAG 1311 0.3791 MEKHQTQELKHSCKFCNKSFPCGRSLGGHMRSHINNSSASSEKTGQKEKLDPINNGCIGSENNGSYGLRENPKKTWRKRIADSSEQGLVYDKLCKECGKCFQSWKALFGHMKCHSEKERVCNSLEDQDSWTNDAKDVHSDNEITAPSRKRRSKRTRTRYNSVVVAAAAAATCSSVSEVEQEQEEVAMSLIMLSRDVSPWSGLAESSDNNSRSSVRTNLVTKFNASASTSTMNIAKLMKHKRFHLKEDTERGIKMKSTKFELDYVSRMDDSEGENGKNIVNGTELVTMGKFECTTCNKMFHSYQALGGHRASHKKNKGCFASNDLSGEPTTESKIMKIIHNHNNNEDIQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVVASSSGAGSETRVPQIRDFLDLNLPAATEEGTSSHADSNRPWWILESNHKQEALVG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6859g00005 436 Pfam C2H2-type zinc finger 355 379 - -
Vifaun6859g00005 436 Pfam C2H2-type zinc finger 290 314 - -
Vifaun6859g00005 436 Pfam C2H2-type zinc finger 94 116 - -
Vifaun6859g00005 436 Pfam C2H2-type zinc finger 11 33 - -
Vifaun6859g00005 436 MobiDBLite consensus disorder prediction 131 148 - -
Vifaun6859g00005 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Vifaun6859g00005 436 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Vifaun6859g00005 436 Gene3D Classic Zinc Finger 1 119 - -
Vifaun6859g00005 436 SMART c2h2final6 290 312 IPR013087 -
Vifaun6859g00005 436 SMART c2h2final6 356 378 IPR013087 -
Vifaun6859g00005 436 SMART c2h2final6 92 114 IPR013087 -
Vifaun6859g00005 436 SMART c2h2final6 11 33 IPR013087 -
Vifaun6859g00005 436 MobiDBLite consensus disorder prediction 131 156 - -
Vifaun6859g00005 436 SUPERFAMILY beta-beta-alpha zinc fingers 289 316 IPR036236 -
Vifaun6859g00005 436 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vifaun6859g00005 436 Gene3D Classic Zinc Finger 287 378 - -
Vifaun6859g00005 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 356 378 IPR013087 -
Vifaun6859g00005 436 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Vifaun6859g00005 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 317 IPR013087 -
Vifaun6859g00005 436 MobiDBLite consensus disorder prediction 31 54 - -
Vifaun6859g00005 436 ProSitePatterns Zinc finger C2H2 type domain signature. 358 378 IPR013087 -
Vifaun6859g00005 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vifaun6859g00005 436 SUPERFAMILY beta-beta-alpha zinc fingers 7 36 IPR036236 -
Vifaun6859g00005 436 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 423 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6859g00005 356 410 C2H2 Transcription Factor Family AT1G26610 49.206 4.86e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifaun6859g00005 zf-C2H2_6 4.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6859g00005 - - psat:127136226 725.702