LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun6820g00002	ATGGCAGGTAGCAAGCTTTTTGGTCCCTCTAATATGTCACTTTTGCTTCAAAATGACTCACTCCCTTCTTCTGAAGTTCTTGAATCTCTTTGGGTTCATACCTCTAACCCTCTCTCTTTTCAAGGTTCAAAAACAATAGTTGATTTTGAGAATGTTGGAAGTGGAAGCAGGGTGGTAACAGACATACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGAATATGAAGCATGTTTTCATCAACAAGGAAAGAAAAGGAGACTTTCAAGTGAACAAGTTCAGTTTCTTGAAAGAAGTTTTGAGGTTGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCTAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGAGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGACTCAAAGATGATTATGATAATCTTGTTCAAGAGAATGACAAGTTAAAAGATGAGGTGAATTTTCTAAAGAAAAAAGTGATTCCATTAGATAAAGAGAATTCAGAAGAGAAATCATCACAAGAAGCTATCAACAAAGAACCTATGGACTTAACCTCAAATGAAAATTCAGAAAATGGGTCCAAAGTGTCATTCCCAAATATGGTACTAAAATGTAAACAAGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGTGAACAATCTTTCCTCATTCATGGAGCCTACTACAGATTCTTCGCATGTTTTCGAACCCGATCACTCCGATTTCTCGCAAGATGAAGAAGATAATGATAACTTGAATGATAATCTTTTGACACTTCCAAAGATTGAAGATGTTTGTTACGACGATCCTCGTGATAATTCTTGTAATTTCGGGTTTGCGGTTGAAGATCAAACGTTTTGTTTCTGGCCTTACTCAATTTAA	984	0.3577	MAGSKLFGPSNMSLLLQNDSLPSSEVLESLWVHTSNPLSFQGSKTIVDFENVGSGSRVVTDIPFFQQLEKEENCGDEEYEACFHQQGKKRRLSSEQVQFLERSFEVENKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDRLKDDYDNLVQENDKLKDEVNFLKKKVIPLDKENSEEKSSQEAINKEPMDLTSNENSENGSKVSFPNMVLKCKQEDANSAKSDVLDSDSPHCNDVNNLSSFMEPTTDSSHVFEPDHSDFSQDEEDNDNLNDNLLTLPKIEDVCYDDPRDNSCNFGFAVEDQTFCFWPYSI	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun6820g00002	327	Gene3D	-	146	210	-	-
	Vifaun6820g00002	327	Pfam	Homeobox associated leucine zipper	143	184	IPR003106	GO:0006355\|GO:0043565
	Vifaun6820g00002	327	CDD	homeodomain	88	144	IPR001356	GO:0003677
	Vifaun6820g00002	327	Coils	Coil	156	183	-	-
	Vifaun6820g00002	327	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	69	244	IPR045224	GO:0003700
	Vifaun6820g00002	327	SMART	HOX_1	86	147	IPR001356	GO:0003677
	Vifaun6820g00002	327	FunFam	homeobox-leucine zipper protein ATHB-6-like	91	137	-	-
	Vifaun6820g00002	327	MobiDBLite	consensus disorder prediction	189	220	-	-
	Vifaun6820g00002	327	PRINTS	Lambda-repressor HTH signature	114	123	IPR000047	GO:0003677
	Vifaun6820g00002	327	PRINTS	Lambda-repressor HTH signature	123	139	IPR000047	GO:0003677
	Vifaun6820g00002	327	ProSitePatterns	'Homeobox' domain signature.	118	141	IPR017970	GO:0000981\|GO:0006355
	Vifaun6820g00002	327	Pfam	Homeodomain	88	141	IPR001356	GO:0003677
	Vifaun6820g00002	327	Gene3D	-	81	145	-	-
	Vifaun6820g00002	327	SUPERFAMILY	Homeodomain-like	79	145	IPR009057	-
	Vifaun6820g00002	327	ProSiteProfiles	'Homeobox' domain profile.	83	143	IPR001356	GO:0003677
	Vifaun6820g00002	327	MobiDBLite	consensus disorder prediction	202	220	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun6820g00002	88	251	Homeobox Transcription Factor Family	AT3G01470	47.701	1.42e-41	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Vifaun6820g00002		Homeodomain	9.8e-16	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun6820g00002	-		K09338	adu:107489132	362.073