Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6820g00001 ATGAGTCGCAAGAGAGACAGCCCTTACTTTTCCCGCCACGACTTCAAGCGCCGCCGTCCACTACCGGAGCCAGCGGAGGAACAGAGACCCACCACCAGGCCGACGCCTCCTTCCGCGGTACTCGTCATGGGTCTCCCTCTCGACTGCTCCGTCCTCGATCTCAAATCCCGATTTGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATAACCTACCGGAATAAAGACTCAGCCGACGCCGCCATCGCCGCTGGCCACGATCCTTCCTTTGGCGTCACCGTCAATTCTAAAAAGGTTCAGGTGTTGTGGGCAACGGATCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAATGTGTCTATGTCAAAGCTTGTCCGAGCTGATGTACCTTTGAGAAGACATGGAAGAAGTAATAAACTTGCTTCAGCTATAGGGAATACCAAAAGTAGTAACGATGGTTCTGGTAGCTCACTTCTTGAAGTTCCTTCCAGAGGTAGAGAAATTGTTGCTTATGATGATATAATGTAA 558 0.5143 MSRKRDSPYFSRHDFKRRRPLPEPAEEQRPTTRPTPPSAVLVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRNKDSADAAIAAGHDPSFGVTVNSKKVQVLWATDPLAMWREGVGKNKDNVSMSKLVRADVPLRRHGRSNKLASAIGNTKSSNDGSGSSLLEVPSRGREIVAYDDIM 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6820g00001 185 MobiDBLite consensus disorder prediction 1 26 - -
Vifaun6820g00001 185 MobiDBLite consensus disorder prediction 1 38 - -
Vifaun6820g00001 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
Vifaun6820g00001 185 CDD RRM_SF 40 108 - -
Vifaun6820g00001 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Vifaun6820g00001 185 SUPERFAMILY RNA-binding domain, RBD 25 119 IPR035979 GO:0003676
Vifaun6820g00001 185 PANTHER GEO13361P1-RELATED 33 140 - -
Vifaun6820g00001 185 Gene3D - 2 115 IPR012677 -
Vifaun6820g00001 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6820g00001 1 185 Homeobox Transcription Factor Family AT1G27050 52.195 5.02e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6820g00001 - - gmx:106797175 288.885