Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6767g00001 ATGGGTAGAACTTCCAAATCTCAGCCTTCAAGCGCCTCCAATTCCGATGAAGAAGAAGAAGAGGTTGAGAACGTTAACGACCAGATCGAAGACGACGAAGACGAACTCGAAGCCGTTGCTCGTTCTGCTAGCTCCGACGATGATGACAATGTGCCGGATGAAGATGAAGCCGGCGAGTACGCCGAAGACGACGATAATCAGGATGAAAGTAATGTAAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGATTGAAGGAACTGGAGAGGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCGCAAAATGCGACAATTGATGCTTCTATGAATACTAAAGGAAAAGGGCGATTGAAGTATCTCTTGCAGCAAACTGAGTTGTTTGCTCATTTTGCTAAAAGCGAGGAGTCTTCTTCTCAAAAGAAGACTAAGGGAAGGGGACGCCATGCATCAAAAATGACCGAGGAAGAGGAAGATGAAGAATATCTTAAAGAAGAGGAAGGTGGTTTAGGAAATACACGTCTGCTTACTCAACCATCATGCATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGACTAAATTGGCTCATACGTTTGTATGAGAATGGAATAAATGGGATTTTAGCAGATGAAATGGGACTTGGCAAAACTTTACAAACTATATCTTTGCTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTACGGGCAATAAAGTTCCTTGGTAGCCCTGATGAAAGGAAACATATAAGAGAGGACCTATTGGTTGCTGGAAAGTTTGATGTAGTTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGACTACATTGCGTAGGTTTAGTTGGCGTTATGTTATTATTGATGAAGCCCACCGGATCAAGAACGAGAACTCCCTCCTTTCCAAAACAATGAGGTTATATAATACAAATTACCGACTCCTTATAACCGGCACACCACTACAGAACAATCTTCATGAACTGTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCAGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAAGAGGTGGTTCAACAGCTACACAAGGTCCTCCGTCCATTTCTTCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGTATGTCCCAGATGCAGAAACAATATTATAAGGCATTGCTGCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGAGAACGGAAACGTCTTCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACATAACAGGAGATCATCTCGTTACAAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTTGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGAAATACTGGTGGAGATGACCGTGATGCTTCCATTGAGGCTTTTAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCCGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGCTGATTTACAAGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGACGGTTAGCTGAACAGAAGACTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGACGACACTGCTGATTTGCTTGATTTTGACGATGAGAAAGATGAAAACAAAGTTGATTTCAAAAAACTTGTGAGTGATAACTGGGTTGAGCCATCAAGAAGAGAACGGAAGCGAAATTATTCAGAGAATGAATACTTCAAACAAACAATGCGCCAAAGTGCTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCACAATTGCACGATTTTCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTTCCTAATGCAAGCACATCAGAAGAATCAGGTCAAAGACTCCATAGATGTTGATGAACCAGAAGAGGGGGGAGAGCCATTGACTGCAGAAGAGTCTGAAGAAAAGGAACAGCTGCTAGAGCAGGGATTTTCATCTTGGAGCCGAAAGGATTTTAACACCTTCATTAGGGCATGTGAAAAATATGGCAGAAATGATATAACAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTTGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAGTTGAATGATTATGATAGAATCATTAAAAACATTGAAAGAGGGGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGGGGCATTTCGGATGTCACCCCTGTTTCGTTTTGATTGGTTTGTAAAGTCGCGCACAACTCAAGAACTAACAAGGAGATGTGACACCCTCATTCGGCTGGTGGAAAAAGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCTCCAAGAGTTCAACTCCATCAAAGCGTGTCTTGCCAAGACAGTCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATTACTACGTTAGTTCGGGGAAGAAAAAGAAATAA 3186 0.4062 MGRTSKSQPSSASNSDEEEEEVENVNDQIEDDEDELEAVARSASSDDDDNVPDEDEAGEYAEDDDNQDESNVNPEISKREKARLKELERLKKQKIQEILDAQNATIDASMNTKGKGRLKYLLQQTELFAHFAKSEESSSQKKTKGRGRHASKMTEEEEDEEYLKEEEGGLGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGSPDERKHIREDLLVAGKFDVVVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYITGDHLVTSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKLVSDNWVEPSRRERKRNYSENEYFKQTMRQSAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRFLMQAHQKNQVKDSIDVDEPEEGGEPLTAEESEEKEQLLEQGFSSWSRKDFNTFIRACEKYGRNDITSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKGAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSSTPSKRVLPRQSESPSLKKRKQLTMDYYVSSGKKKK 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6767g00001 1061 SUPERFAMILY Homeodomain-like 892 1014 IPR009057 -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 1008 1045 - -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 135 157 - -
Vifaun6767g00001 1061 SUPERFAMILY Homeodomain-like 840 890 IPR009057 -
Vifaun6767g00001 1061 ProSiteProfiles SANT domain profile. 836 888 IPR017884 -
Vifaun6767g00001 1061 CDD SF2_C_SNF 487 612 - -
Vifaun6767g00001 1061 Pfam HAND 749 832 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vifaun6767g00001 1061 CDD DEXHc_SMARCA1_SMARCA5 183 403 IPR044754 GO:0005524
Vifaun6767g00001 1061 FunFam Chromatin-remodeling complex ATPase 187 402 - -
Vifaun6767g00001 1061 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 363 IPR014001 -
Vifaun6767g00001 1061 Gene3D - 187 402 IPR038718 -
Vifaun6767g00001 1061 Gene3D - 837 891 - -
Vifaun6767g00001 1061 Gene3D - 407 699 IPR027417 -
Vifaun6767g00001 1061 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 642 IPR001650 -
Vifaun6767g00001 1061 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 748 839 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 14 37 - -
Vifaun6767g00001 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 401 IPR027417 -
Vifaun6767g00001 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 925 1029 - -
Vifaun6767g00001 1061 Pfam Helicase conserved C-terminal domain 491 601 IPR001650 -
Vifaun6767g00001 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 683 IPR027417 -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 1008 1025 - -
Vifaun6767g00001 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 738 836 - -
Vifaun6767g00001 1061 SMART ultradead3 182 374 IPR014001 -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 132 167 - -
Vifaun6767g00001 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 407 699 - -
Vifaun6767g00001 1061 SMART sant 837 886 IPR001005 -
Vifaun6767g00001 1061 Gene3D iswi atpase 892 924 - -
Vifaun6767g00001 1061 SMART helicmild6 517 601 IPR001650 -
Vifaun6767g00001 1061 Gene3D - 925 1029 - -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 1 81 - -
Vifaun6767g00001 1061 Coils Coil 12 46 - -
Vifaun6767g00001 1061 CDD SANT 840 884 IPR001005 -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 737 770 - -
Vifaun6767g00001 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 837 891 - -
Vifaun6767g00001 1061 Pfam SNF2-related domain 199 466 IPR000330 GO:0005524|GO:0140658
Vifaun6767g00001 1061 Pfam SLIDE 894 1004 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vifaun6767g00001 1061 Gene3D ISWI, HAND domain 738 836 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vifaun6767g00001 1061 Coils Coil 987 1021 - -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 48 70 - -
Vifaun6767g00001 1061 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 72 1046 - -
Vifaun6767g00001 1061 MobiDBLite consensus disorder prediction 805 834 - -
Vifaun6767g00001 1061 Coils Coil 77 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6767g00001 207 628 RAD5 or RAD16-like Gene Family AT1G02670 27.327 1.00e-42 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifaun6767g00001 SNF2_N 4.2e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6767g00001 K11654 - gmx:100791510 1855.11