Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6746g00003 ATGGCTTATGAACAAGAAACAAAAACCAAAGCAAAAACCGAGACTGAACACTGTGAAGGTGGTGTGCTTTTTGATCGAATCGTTGCTAGAGGACATTACAGAGAACGCTCCGCAGCTTCTATCATTAAAACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACCTGAAAACATTTTGTTTGCAAATAACATGGAAACAGCGCCCTTAAAAGTTACTGACTTTGATTTGTCAATATTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAATCTATATTACATGGCCCCTGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTGAGCAGGGAGTTTCTCAAGCAATTATACTGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAATGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTCTGCAATGAACAAACTTAAGACAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTATATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCCGACGAGATTGACAAAAACAGTGAAGAAATCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATAAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGAGGTTTAACAGTATAAATTGA 1131 0.3882 MAYEQETKTKAKTETEHCEGGVLFDRIVARGHYRERSAASIIKTIVQVVQMCHKHGVMHRNLKPENILFANNMETAPLKVTDFDLSIFFKPGERFHEIVGNLYYMAPELLMKNYGPEVDIWSVGVILYILLCGVPPFWAETEQGVSQAIILSVIDFKRDPWPMVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWLQNGKTASNVSLRETVNVRLMQYSAMNKLKTTALRVIADHLSVEEVAGIKEGFHLGHQIPDADVQILMEAGDVDKDGYLDYGEFVAIYIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEIINAIMHDVDTDKDGKISYKEFAAMMKARTDWRKASRQYSRERFNSIN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6746g00003 376 ProSitePatterns EF-hand calcium-binding domain. 266 278 IPR018247 -
Vifaun6746g00003 376 ProSiteProfiles EF-hand calcium-binding domain profile. 289 324 IPR002048 GO:0005509
Vifaun6746g00003 376 Pfam EF-hand domain pair 249 280 IPR002048 GO:0005509
Vifaun6746g00003 376 Pfam Protein kinase domain 15 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6746g00003 376 CDD EFh 293 355 IPR002048 GO:0005509
Vifaun6746g00003 376 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 350 - -
Vifaun6746g00003 376 ProSiteProfiles EF-hand calcium-binding domain profile. 253 288 IPR002048 GO:0005509
Vifaun6746g00003 376 SMART serkin_6 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6746g00003 376 Pfam EF-hand domain pair 292 355 IPR002048 GO:0005509
Vifaun6746g00003 376 ProSitePatterns EF-hand calcium-binding domain. 302 314 IPR018247 -
Vifaun6746g00003 376 Coils Coil 308 328 - -
Vifaun6746g00003 376 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6746g00003 376 SUPERFAMILY Protein kinase-like (PK-like) 15 211 IPR011009 -
Vifaun6746g00003 376 Gene3D - 204 359 - -
Vifaun6746g00003 376 FunFam calcium-dependent protein kinase 13 23 203 - -
Vifaun6746g00003 376 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Vifaun6746g00003 376 Gene3D Transferase(Phosphotransferase) domain 1 18 203 - -
Vifaun6746g00003 376 SUPERFAMILY EF-hand 219 366 IPR011992 -
Vifaun6746g00003 376 FunFam Calmodulin 1 232 357 - -
Vifaun6746g00003 376 SMART efh_1 293 321 IPR002048 GO:0005509
Vifaun6746g00003 376 SMART efh_1 329 357 IPR002048 GO:0005509
Vifaun6746g00003 376 SMART efh_1 257 285 IPR002048 GO:0005509
Vifaun6746g00003 376 ProSiteProfiles EF-hand calcium-binding domain profile. 325 360 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6746g00003 16 376 EF-hand Containing Proteins AT5G19450 69.974 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifaun6746g00003 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6746g00003 K13412 - gmx:100778471 588.956