Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6746g00002 ATGAAAAATTGCTGGGCAAATCTATGGCTTATGAACAAGAAACAAAAACCAAAGCAAAAACCGAGACTGGATACGTATGAAGACGACGATCACGTTCTTCTTGTTATGGAACACTGTGAAGGTGGTAACCTTTTGGATCGCATCAATGGTAGAGGACATTTCACCGATGCTAACCTTTGGGATCGCATCAATGGTAGAGGACATTTCACCGAAAGCAGAGCTGCTTCTGTCATTAATACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACTTGAAAACATTTTGTTTGCAAATAATATGGGAACAGCGCCCTTAAAAGTTACTGACTTTGCTTTGTCAATTTTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAAACTATATTACATGGCCCCTGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTAAGCAGGGAGTTTCTCAAGCAATTATACGGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTTCAGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTTTGCAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGAATTCCATGTGATGGACACAGAAAATAATGGCAAAATTAACATTGACGAACTTCGAGTAGGGTTGATTAAGCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACGAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTTTATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCTGACGAGATTGACAAAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTAG 1275 0.3898 MKNCWANLWLMNKKQKPKQKPRLDTYEDDDHVLLVMEHCEGGNLLDRINGRGHFTDANLWDRINGRGHFTESRAASVINTIVQVVQMCHKHGVMHRNLKLENILFANNMGTAPLKVTDFALSIFFKPGERFHEIVGKLYYMAPELLMKNYGPEVDIWSVGVILYILLCGVPPFWAETKQGVSQAIIRSVIDFKRDPWPKVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWFQNGKTASNVSLRETVNVRLMQYFAMNKLKKTALRVIADHLSVEEVAGIKEEFHVMDTENNGKINIDELRVGLIKLGHQIPDADVQILMEAGDVDEDGYLDYGEFVAIFIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEVINAIMHDVDTDKDGKISYEEFAAMMKARTDWRKASRQY 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6746g00002 424 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Vifaun6746g00002 424 CDD EFh 350 412 IPR002048 GO:0005509
Vifaun6746g00002 424 Gene3D - 240 416 - -
Vifaun6746g00002 424 ProSiteProfiles EF-hand calcium-binding domain profile. 310 345 IPR002048 GO:0005509
Vifaun6746g00002 424 SUPERFAMILY EF-hand 256 420 IPR011992 -
Vifaun6746g00002 424 Gene3D Transferase(Phosphotransferase) domain 1 7 239 - -
Vifaun6746g00002 424 FunFam Calcium-dependent protein kinase 7 240 415 - -
Vifaun6746g00002 424 Pfam Protein kinase domain 24 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6746g00002 424 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Vifaun6746g00002 424 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Vifaun6746g00002 424 ProSiteProfiles EF-hand calcium-binding domain profile. 274 309 IPR002048 GO:0005509
Vifaun6746g00002 424 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 407 - -
Vifaun6746g00002 424 FunFam calcium-dependent protein kinase 13 59 239 - -
Vifaun6746g00002 424 SMART efh_1 278 306 IPR002048 GO:0005509
Vifaun6746g00002 424 SMART efh_1 314 342 IPR002048 GO:0005509
Vifaun6746g00002 424 SMART efh_1 350 378 IPR002048 GO:0005509
Vifaun6746g00002 424 SMART efh_1 386 414 IPR002048 GO:0005509
Vifaun6746g00002 424 ProSitePatterns EF-hand calcium-binding domain. 323 335 IPR018247 -
Vifaun6746g00002 424 Pfam EF-hand domain pair 306 337 IPR002048 GO:0005509
Vifaun6746g00002 424 Coils Coil 365 385 - -
Vifaun6746g00002 424 Pfam EF-hand domain pair 349 412 IPR002048 GO:0005509
Vifaun6746g00002 424 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Vifaun6746g00002 424 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6746g00002 424 SUPERFAMILY Protein kinase-like (PK-like) 23 238 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6746g00002 24 424 EF-hand Containing Proteins AT5G19450 69.154 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifaun6746g00002 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6746g00002 K13412 - gmx:100778471 614.379