Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6622g00007 ATGATTTCAATCTCTGAGATAAATAATTTAAGTTATGAAACTTCACATTCAAAACGTGCAAGGTATGAAGAAGAAGATGTAGGGTTACAAAGGTTCAAAGGTGTTGTGCCACAACAAAACGGTCATTGGGGTGCACAAATTTATGCAAATCATCAAAGAATATGGCTAGGAACATTCACATCTGAGAAAGATGCTGCCATGGCTTATGATAGTGCCACCGTGAAGCTCCGAAGCGGAGAAAGCCACCGGAACTTTCCATGGAATGACCAAACAGTTCAAGAGCCTTTGTTTCAAAGTCATTATAGCATGGAAAAGGTGCTTAGCATGATTAGAAATGGAACATATCAAAATAAGTTTTCTACATTTGTTATGAATATTCAAAGCCAACGTGGTAAAGAAAGCATTGTTGGGAGAAAGAATGAGGAACGGTTTTCATGCATGCAGATTTTTCAAAAAGAATTAACACCTAGTGATGTTGGTAAACTCAACAGGCTTGTCATCCCTAAAAAACATGCGGTTACGTATCTGCCTTTGATTGGTGACAACAATAATATAACTAATGATGATGATGATAAGTTTAATGATCAAGAGGTTGTATTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGTTATTGGAAGAGTAGCCAAAGCTATGTGTTCACTAGAGGGTGGAATCGATTTGTGAAGGATAAAAAACTCAAGGCCAAAGACACCATTGTGTTTTATATGTGTGAACCTATAAATTCAACAAAAGAAGTAAATGGACATGTGTTTTCAATGATAGATGTAATCTATAATGATGTTGGTGATAGAAAAAAGCTTTACTTTGAAGATGAGAATGGAAGAAATGGAAAACTAGATTTAGGGGAAAATTTTATTTGCACTGAATTGGATGATCAAAAGAGTCAAGGTAGAATAGATTTGAATGTGTTCCATGCACAAAAAGGCTTCAAGCTCTTTGGCGTAAATATTAACTAA 987 0.3536 MISISEINNLSYETSHSKRARYEEEDVGLQRFKGVVPQQNGHWGAQIYANHQRIWLGTFTSEKDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSHYSMEKVLSMIRNGTYQNKFSTFVMNIQSQRGKESIVGRKNEERFSCMQIFQKELTPSDVGKLNRLVIPKKHAVTYLPLIGDNNNITNDDDDKFNDQEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYMCEPINSTKEVNGHVFSMIDVIYNDVGDRKKLYFEDENGRNGKLDLGENFICTELDDQKSQGRIDLNVFHAQKGFKLFGVNIN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6622g00007 328 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00007 328 ProSiteProfiles AP2/ERF domain profile. 31 86 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00007 328 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 327 IPR044800 GO:0003700
Vifaun6622g00007 328 ProSiteProfiles B3 DNA-binding domain profile. 150 264 IPR003340 GO:0003677
Vifaun6622g00007 328 Pfam B3 DNA binding domain 150 248 IPR003340 GO:0003677
Vifaun6622g00007 328 CDD B3_DNA 149 246 IPR003340 GO:0003677
Vifaun6622g00007 328 SMART B3_2 150 262 IPR003340 GO:0003677
Vifaun6622g00007 328 Gene3D AP2/ERF domain 30 87 IPR036955 GO:0003700|GO:0006355
Vifaun6622g00007 328 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Vifaun6622g00007 328 SUPERFAMILY DNA-binding pseudobarrel domain 148 249 IPR015300 -
Vifaun6622g00007 328 SMART rav1_2 31 92 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00007 328 FunFam AP2 domain-containing protein RAP2.8 30 87 - -
Vifaun6622g00007 328 Gene3D - 146 263 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6622g00007 28 327 RAV Transcription Factor Family AT1G50680 49.688 1.65e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6622g00007 B3 3.5e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6622g00007 K09287 - gmx:102660503 360.918