Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6622g00005 ATGATTTCAATCTCTGAGATAAATAATTTAAGTTATGAAACTTCACATTCAAAACGTGCAAGGTATGAAGAAGAAGATGTAGGGTTACAAAGGTTCAAAGGTGTTGTGCCACAACAAAATGGTCATTGGGGTGCACAAATTTATGCAAATCATCAAAGAATATGGCTAGGAACATTCACATCTGAGAAAGATGCTGCCATGGCTTATGATAGTGCCACCGTGAAGCTCCGAAGCGGAGAAAGCCACCGGAACTTTCCATGGAATGACCAAACAGTTCAAGAGCCTTTGTTTCAAAGTCATTATAGCATGGAAAAGGTGCTTAGCATGATTAGAAATGGAACATATCAAAATAAGTTTTCTACATTTGTTATGAATGTTCAAAGCCAACGTGGTAAAGAAAGCATTGTTGGGAGGAAGAATGAGGAACGGTTTTCATGCATGCAGATTTTTCAAAAAGAATTAACACCTAGTGATGTTGGTAAACTCAACAGGCTTGTCATCCCTAAAAAACATGCGGTTACGTATCTGCCTTTGATTGGTGACAACAATAATATAACTAATGATGATGATAAGTTTAATGATCAAGAGGTTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGTTATTGGAAGAGTAGCCAAAGCTATGTGTTCACTAGAGGGTGGAATCGATTTGTGAAGGATAAGAAACTCAAGGCCAAAGACACCATTGTGTTTTATATGTGTGAACCTATAAATTCAACAAAAGAAGTAAATGGAAATGTGTTTTCAATGATAGATGTAATCTATAATGATGTTGGTGATAGAAAAAAGCTTTACTTTGAAGATGAGAATGGAAGAAATGGAAAACTAGATTTAGGGGAAAAATTTATTTGCACTGAATTGGATGATCAAAAGAGTCAAGGTAGAATAGATTTGAATGTGTTCCATGCACAAAAAGGCTTCAAGCTCTTTGGCGTAAATATTAACTAA 984 0.3557 MISISEINNLSYETSHSKRARYEEEDVGLQRFKGVVPQQNGHWGAQIYANHQRIWLGTFTSEKDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSHYSMEKVLSMIRNGTYQNKFSTFVMNVQSQRGKESIVGRKNEERFSCMQIFQKELTPSDVGKLNRLVIPKKHAVTYLPLIGDNNNITNDDDKFNDQEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYMCEPINSTKEVNGNVFSMIDVIYNDVGDRKKLYFEDENGRNGKLDLGEKFICTELDDQKSQGRIDLNVFHAQKGFKLFGVNIN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6622g00005 327 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00005 327 Gene3D - 146 261 IPR015300 -
Vifaun6622g00005 327 Gene3D AP2/ERF domain 30 87 IPR036955 GO:0003700|GO:0006355
Vifaun6622g00005 327 CDD B3_DNA 149 245 IPR003340 GO:0003677
Vifaun6622g00005 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 326 IPR044800 GO:0003700
Vifaun6622g00005 327 SUPERFAMILY DNA-binding pseudobarrel domain 148 247 IPR015300 -
Vifaun6622g00005 327 ProSiteProfiles AP2/ERF domain profile. 31 86 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00005 327 SMART B3_2 150 253 IPR003340 GO:0003677
Vifaun6622g00005 327 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Vifaun6622g00005 327 SMART rav1_2 31 92 IPR001471 GO:0003700|GO:0006355
Vifaun6622g00005 327 FunFam AP2 domain-containing protein RAP2.8 30 87 - -
Vifaun6622g00005 327 Pfam B3 DNA binding domain 150 246 IPR003340 GO:0003677
Vifaun6622g00005 327 ProSiteProfiles B3 DNA-binding domain profile. 150 263 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6622g00005 31 265 RAV Transcription Factor Family AT1G51120 58.566 6.55e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6622g00005 B3 3.3e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6622g00005 K09287 - gmx:102660503 361.688