Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6580g00002 ATGCCGGACGGAGATTCCTCCACCGCCTCTACCGTTCAACTTCCGATGGAGACCTCGGGAAACCTATTCGATCATGGACAGTCTCTGAATCTTACCCTAGTCAACAATCGTGAGGGTAAAGTCAAAAAAGATCCTACGAAAATTGCACGAGAGTATCAATTGGAGTTATGCAAAATAGCTATGGAGGAAAATGTAATTGTTTATTTGGGAACAGGATGTGGGAAGACGCACATTGCTGTGTTACTCATGCATGAAATGAGGTATTTGATCAAGAAGCCGAGCAAGGACGTGTGCGTTTTTCTTGCACCTACTGTTGCTCTAGTTAATCAGCAAGCAAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGCGCTCGAAATCGCATCAACATTGGGAGGAGGAGATTGAACAGTATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCTTGAAGATGGAGATGATCGCACTTTTAATATTTGACGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATTATGAAAGTCTTTTACAAAAATAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGCGGTTCTTCTGAAGCAAATCTACCGAAAAGCATCAATAGTCTCGAACAAATGCTTGATGCTAAGGTATACTCAGTTGAAGACACGGCATTGGAATCTTTTGTTACCACTCCTGCAGTTCAGATATATCATTATAGTTCGACTGCAAGTATGGAAACTAGCTTGTACTGGAAAATTGAAGAGATTAAATGCCAGCAGTGCATAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAATCGGGTCCACGATAATGTGGTCTTCTGTCTCAGGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCGGAAGGAATTTCAAGTGACGTGTCTGTATGTGATAAATATCTTGCAAAGACAGCTGAACTACTTACATCCAAATGCATGACAGGTGACAATGTTTCTGATCCATCTTCTTTGGAAATATTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATATATACTACAGCAGCTCAAGCTTCTAAGTCAATGGAAAAATGATTTTCTTGTAGGAGTCCACGTGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAAAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGGCTTGATATTCAGACATGTTGCCTCGTCATACGGTTTGATCTACCCGAAACTGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCCCGCATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATACGGAAATTGCTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCTTCAGTCAGTGCGGGATACAGTGTCTCATTACTTCACCAGTATTGCTCAAAGCTTCCGCATGATGAGTACTTTGATCCTAGGCCAAGTTTCTTTTATTTCGATGATTCAGGGGGAACTGTCTGCCAGATGACTTTGCCTTCCAATGCTCCGATACACCAAATTGTCAGTGCGCCACATTTGTCTATGGAAGCTTCAAAAAGAGACGCATGTCTGAAAGCAATTGAAGAACTGTATAAATTGGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGACGCAGAGCCCGAGGTTTTGGACTCTTCTGATTCAGATGAGTGTGAAGATGACATTTCAAGAGGAGAACTATATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGAAAAATGCGGAGAGAACTGTCTGTCTCAACGCTTATTACATTAAATTTTTCCCCACTCCGGAGGATAGGGTCTATAAAAAGTTTGGCTTGTTCATCATGACTCGTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATCTGTGAAGACAAAATTTATTCCATTTGGAGTTGTAGAGTTCAACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATTAGAATTTGTTTCTAAGTTTGTAGAATTGAGTGCTGAATCCCACACGCGCACATCGACTTTCTACCTTTTGCTTCCAGTCATACTGAAAGAATATGCGATGAACATAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCAGCAATCTTCAGGCATCCAGAAGATGCATTGGATAAAAAGGTTACCCCTTTGGATAATCATTTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATACTTCACACACGAAGGCCTTCTTTTTCGTCACAAATGTTATTTATGAAAAGAATGGATTCAGCCCTTTCAAAGATTCAGACACTTCAAGCTACATGGACCACTTACATAAAAAGTTTTCCATTACTCTCAAACACCCCGAACAACCACTTCTACATGCAAAACCACTCTTTAAGTTGCACAACCTGCTACACAATCGAAGGCATGGGGATGCTGAACCAGATGAGCTAGAGGAATACTTTAATTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTTGGCTTTTCAAAGGATATTGGTAGTTCATTATCTCTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCACCTATATTCCTCCTTCCCGGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAAAAGTGTCAGGAGCGTTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTGGGGCGTCATTTCTTTCTCTTGCATGACAGCTTACATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTAAATAACTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGGCGTCCTTGCCCAATAGTTTGTACAGAGGAAACTGAAGACAGCATACACTTATGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAACTCGAATCCGATGTAATAAAAATCACCATTGGTTGCACAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCATTTGCCTTTCTTACATGGATTGGCATACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCAACGGAAGTGTTGGCTATTTTCCTCTTTCTGCTGAAATAGACATTCCTTCCCTTGAAGGTAAGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCATGGAGGAGGCTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACGTCTTATCTATACTCAGCTTATCCTAAACTAAAGCCTGGCCAACTGACGGATCTGAGATCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTGGATCGTTGTTTTGATGAATTTCTTCTATGTGATTCAAGTGCTCTGACCCAGGCAATAAAACAGTATGCTGACTATATTAGAAGACCTATATCAGACTCTGGCAATAATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCTTGTATTGGTGCCGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACTTCTTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAATTGCAGCTTCAGACATCAAAAAAACTAGCTAAAACTTTTTTAGTTGAAGCAAAAGTGATTGGGGACGGTGTATGTGAAGAAGTTTATGTGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAACTACTATTTTCAAAGTTGAAGGCTCAAGACTTGAAACTGAAGTCCAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAAAACTCATTGGCTATGATGAAACTCCCATTGATGTATCTGATGCATCCTCCTTGAATGTAAAACCTGTTGTCCAACGGCTTCAATCTTCTCATAAGGGAAAGCTTAGTGAAACCATTCGGAATCGTGATTGTGTTAGTGACTCATCGAAAACAGCAAAAGCGCGATTGTATGAATTATGTCAATCTTATTGCTGGAAAGGTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCAAAGCGACGATGAAGATAGAAGAGGCCCCAGATACAGTTTTTGAGTTTATCGGGGAACCCTTGCCTAAGAAGAAAGATGCAACAGATAGTGCAGCTGAGGGTGCATTATGGTACCTGCAAAAGGAAGGTTATCTGCGCAATGCTAATGGTAATTGA 4806 0.407 MPDGDSSTASTVQLPMETSGNLFDHGQSLNLTLVNNREGKVKKDPTKIAREYQLELCKIAMEENVIVYLGTGCGKTHIAVLLMHEMRYLIKKPSKDVCVFLAPTVALVNQQAKVISDSTDFEVGTYCGSSKRSKSHQHWEEEIEQYEVLVMTPQILLHNLSHCFLKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGGSSEANLPKSINSLEQMLDAKVYSVEDTALESFVTTPAVQIYHYSSTASMETSLYWKIEEIKCQQCIETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGIWGALQASRILLSGDLSERQALVEAEGISSDVSVCDKYLAKTAELLTSKCMTGDNVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQQLKLLSQWKNDFLVGVHVGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNTEIAVRTSSETHNIPVEKIFRVDSSGASVSAGYSVSLLHQYCSKLPHDEYFDPRPSFFYFDDSGGTVCQMTLPSNAPIHQIVSAPHLSMEASKRDACLKAIEELYKLGSLNDCLLPKQNDAEPEVLDSSDSDECEDDISRGELYEMLVPSAFGQSWKNAERTVCLNAYYIKFFPTPEDRVYKKFGLFIMTRLPMEAEKLELDLHLAHGRSVKTKFIPFGVVEFNKDEIKMAENFQEMFLKVILDRLEFVSKFVELSAESHTRTSTFYLLLPVILKEYAMNIDWKTVKRCLCSAIFRHPEDALDKKVTPLDNHLQLANGYRSVRDVENSLVYTSHTKAFFFVTNVIYEKNGFSPFKDSDTSSYMDHLHKKFSITLKHPEQPLLHAKPLFKLHNLLHNRRHGDAEPDELEEYFNYLPPELCELKIVGFSKDIGSSLSLLPSIMHRLGNLLVAIELKHHLYSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVGRHFFLLHDSLHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYALGRPCPIVCTEETEDSIHLCLNSGEEKRSVTRIRCNKNHHWLHRKTIADVVEALVGAFIVDSGFKAAFAFLTWIGIQVNFEASQVVNICNGSVGYFPLSAEIDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDEFLLCDSSALTQAIKQYADYIRRPISDSGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLQTSKKLAKTFLVEAKVIGDGVCEEVYVTSQNKKEASRIASQLLFSKLKAQDLKLKSKTLEDVMKSTFKTEPKLIGYDETPIDVSDASSLNVKPVVQRLQSSHKGKLSETIRNRDCVSDSSKTAKARLYELCQSYCWKGPSFECCKEEGPDHLKLFTCKATMKIEEAPDTVFEFIGEPLPKKKDATDSAAEGALWYLQKEGYLRNANGN 1601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6580g00002 1601 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Vifaun6580g00002 1601 FunFam Endoribonuclease dicer-like 1 385 548 - -
Vifaun6580g00002 1601 ProSiteProfiles Ribonuclease III family domain profile. 1204 1348 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SMART DRBM_3 1376 1441 IPR014720 -
Vifaun6580g00002 1601 SMART DRBM_3 1516 1590 IPR014720 -
Vifaun6580g00002 1601 Pfam Ribonuclease III domain 1239 1348 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 Pfam Ribonuclease III domain 1032 1163 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SUPERFAMILY dsRNA-binding domain-like 1513 1594 - -
Vifaun6580g00002 1601 Gene3D Ribonuclease III domain 1202 1375 IPR036389 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SUPERFAMILY RNase III domain-like 1016 1177 IPR036389 GO:0004525|GO:0006396
Vifaun6580g00002 1601 ProSitePatterns Ribonuclease III family signature. 1239 1247 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1515 1590 - -
Vifaun6580g00002 1601 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1515 1591 IPR014720 -
Vifaun6580g00002 1601 SUPERFAMILY PAZ domain 863 965 IPR036085 GO:0005515
Vifaun6580g00002 1601 CDD RIBOc 1220 1370 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SMART ultradead3 45 242 IPR014001 -
Vifaun6580g00002 1601 Pfam Dicer dimerisation domain 578 663 - -
Vifaun6580g00002 1601 Pfam PAZ domain 867 988 IPR003100 GO:0005515
Vifaun6580g00002 1601 Pfam Helicase conserved C-terminal domain 399 512 IPR001650 -
Vifaun6580g00002 1601 Gene3D - 387 548 IPR027417 -
Vifaun6580g00002 1601 CDD DSRM_DCL_plant 1522 1591 - -
Vifaun6580g00002 1601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Vifaun6580g00002 1601 CDD RIBOc 1017 1173 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 FunFam Endoribonuclease dicer-like 1 1198 1369 - -
Vifaun6580g00002 1601 SMART PAZ_2_a_3 843 993 IPR003100 GO:0005515
Vifaun6580g00002 1601 ProSiteProfiles Ribonuclease III family domain profile. 1018 1163 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 Gene3D Ribonuclease III domain 1012 1174 IPR036389 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SMART riboneu5 1219 1371 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 SMART riboneu5 1016 1183 IPR000999 GO:0004525|GO:0006396
Vifaun6580g00002 1601 Gene3D Dicer dimerisation domain 574 669 IPR038248 -
Vifaun6580g00002 1601 SUPERFAMILY dsRNA-binding domain-like 1330 1441 - -
Vifaun6580g00002 1601 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Vifaun6580g00002 1601 Gene3D - 1522 1592 - -
Vifaun6580g00002 1601 FunFam Endoribonuclease dicer-like protein 44 283 - -
Vifaun6580g00002 1601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 549 IPR001650 -
Vifaun6580g00002 1601 PANTHER DICER-RELATED 63 1446 - -
Vifaun6580g00002 1601 SMART helicmild6 424 514 IPR001650 -
Vifaun6580g00002 1601 Gene3D - 49 301 IPR027417 -
Vifaun6580g00002 1601 ProSiteProfiles PAZ domain profile. 867 967 IPR003100 GO:0005515
Vifaun6580g00002 1601 SUPERFAMILY RNase III domain-like 1203 1367 IPR036389 GO:0004525|GO:0006396
Vifaun6580g00002 1601 FunFam Endoribonuclease dicer-like 1 573 669 - -
Vifaun6580g00002 1601 CDD DEXHc_dicer 47 246 - -
Vifaun6580g00002 1601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 529 IPR027417 -
Vifaun6580g00002 1601 Gene3D paz domain 860 965 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6580g00002 412 544 Eukaryotic Initiation Factors Gene Family AT3G19760 31.159 1.19e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6580g00002 K11592 - gmx:100818702 2492.23