Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifaun6580g00001 | ATGCCGGACGGAGATTCCTCCACCGCCTCTACCGTTCAACTTCCGATGGAGACCTCGGGAAACCTATTCGATCATGGACAGTCTCTGAATCTTACCCTAGTCAACAATCGTGAGGGTAAAGTCAAAAAAGATCCTACGAAAATTGCACGAGAGTATCAATTGGAGTTATGCAAAATAGCTATGGAGGAAAATGTAATTGTTTATTTGGGAACAGGATGTGGGAAGACGCACATTGCTGTGTTACTCATGCATGAAATGAGGTATTTGATCAAGAAGCCGAGCAAGGACGTGTGCGTTTTTCTTGCACCTACTGTTGCTCTAGTTAATCAGCAAGCAAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGCGCTCGAAATCGCATCAACATTGGGAGGAGGAGATTGAACAGTATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCTTGAAGATGGAGATGATCGCACTTTTAATATTTGACGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATTATGAAAGTCTTTTACAAAAATAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGCGGTTCTTCTGAAGCAAATCTACCGAAAAGCATCAATAGTCTCGAACAAATGCTTGATGCTAAGGTATACTCAGTTGAAGACACGGCATTGGAATCTTTTGTTACCACTCCTGCAGTTCAGATATATCATTATAGTTCGACTGCAAGTATGGAAACTAGCTTGTACTGGAAAATTGAAGAGATTAAATGCCAGTGCATAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAATCGGGTCCACGATAATGTGGTCTTCTGTCTCAGGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCGGAAGGAATTTCAAGTGACGTGTCTGTATGTGATAAATATCTTGCAAAGACAGCTGAACTACTTACATCCAAATGCATGACAGGTGACAATGTTTCTGATCCATCTTCTTTGGAAATATTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATATATACTACAGCAGCTCAAGCTTCTAAGTCAATGGAAAAATGATTTTCTTGTAGGAGTCCACGTGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAAAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGGCTTGATATTCAGACATGTTGCCTCGTCATACGGTTTGATCTACCCGAAACTGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCCCGCATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATACGGAAATTGCTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCTTCAGTCAGTGCGGGATACAGTGTCTCATTACTTCACCAGTATTGCTCAAAGCTTCCGCATGATGAGTACTTTGATCCTAGGCCAAGTTTCTTTTATTTCGATGATTCAGGGGGAACTGTCTGCCAGATGACTTTGCCTTCCAATGCTCCGATACACCAAATTGTCAGTGCGCCACATTTGTCTATGGAAGCTTCAAAAAGAGACGCATGTCTGAAAGCAATTGAAGAACTGTATAAATTGGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGACGCAGAGCCCGAGGTTTTGGACTCTTCTGATTCAGATGAGTGTGAAGATGACATTTCAAGAGGAGAACTATATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGAAAAATGCGGAGAGAACTGTCTGTCTCAACGCTTATTACATTAAATTTTTCCCCACTCCGGAGGATAGGGTCTATAAAAAGTTTGGCTTGTTCATCATGACTCGTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATCTGTGAAGACAAAATTTATTCCATTTGGAGTTGTAGAGTTCAACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATTAGAATTTGTTTCTAAGTTTGTAGAATTGAGTGCTGAATCCCACACGCGCACATCGACTTTCTACCTTTTGCTTCCAGTCATACTGAAAGAATATGCGATGAACATAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCAGCAATCTTCAGGCATCCAGAAGATGCATTGGATAAAAAGGTTACCCCTTTGGATAATCATTTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATACTTCACACACGAAGGCCTTCTTTTTCGTCACAAATGTTATTTATGAAAAGAATGGATTCAGCCCTTTCAAAGATTCAGACACTTCAAGCTACATGGACCACTTACATAAAAAGTTTTCCATTACTCTCAAACACCCCGAACAACCACTTCTACATGCAAAACCACTCTTTAAGTTGCACAACCTGCTACACAATCGAAGGCATGGGGATGCTGAACCAGATGAGCTAGAGGAATACTTTAATTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTTGGCTTTTCAAAGGATATTGGTAGTTCATTATCTCTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCACCTATATTCCTCCTTCCCGGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAAAAGTGTCAGGAGCGTTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTGGGGCGTCATTTCTTTCTCTTGCATGACAGCTTACATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTAAATAACTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGGCGTCCTTGCCCAATAGTTTGTACAGAGGAAACTGAAGACAGCATACACTTATGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAACTCGAATCCGATGTAATAAAAATCACCATTGGTTGCACAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCATTTGCCTTTCTTACATGGATTGGCATACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCAACGGAAGTGTTGGCTATTTTCCTCTTTCTGCTGAAATAGACATTCCTTCCCTTGAAGGTAAGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCATGGAGGAGGCTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACGTCTTATCTATACTCAGCTTATCCTAAACTAAAGCCTGGCCAACTGACGGATCTGAGATCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTGGATCGTTGTTTTGATGAATTTCTTCTATGTGATTCAAGTGCTCTGACCCAGGCAATAAAACAGTATGCTGACTATATTAGAAGACCTATATCAGACTCTGGCAATAATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCTTGTATTGGTGCCGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACTTCTTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAATTGCAGCTTCAGACATCAAAAAAACTAGCTAAAACTTTTTTAGTTGAAGCAAAAGTGATTGGGGACGGTGTATGTGAAGAAGTTTATGTGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAACTACTATTTTCAAAGTTGAAGGCTCAAGACTTGAAACTGAAGTCCAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAAAACTCATTGGCTATGATGAAACTCCCATTGATGTATCTGATGCATCCTCCTTGAATGTAAAACCTGTTGTCCAACGGCTTCAATCTTCTCATAAGGGAAAGCTTAGTGAAACCATTCGGAATCGTGATTGTGTTAGTGACTCATCGAAAACAGCAAAAGCGCGATTGTATGAATTATGTCAATCTTATTGCTGGAAAGGTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCAAAGCGACGATGAAGATAGAAGAGGCCCCAGATACAGTTTTTGAGTTTATCGGGGAACCCTTGCCTAAGAAGAAAGATGCAACAGATAGTGCAGCTGAGGGTGCATTATGGTACCTGCAAAAGGAAGGTTATCTGCGCAATGCTAATGGTAATTGA | 4803 | 0.4068 | MPDGDSSTASTVQLPMETSGNLFDHGQSLNLTLVNNREGKVKKDPTKIAREYQLELCKIAMEENVIVYLGTGCGKTHIAVLLMHEMRYLIKKPSKDVCVFLAPTVALVNQQAKVISDSTDFEVGTYCGSSKRSKSHQHWEEEIEQYEVLVMTPQILLHNLSHCFLKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGGSSEANLPKSINSLEQMLDAKVYSVEDTALESFVTTPAVQIYHYSSTASMETSLYWKIEEIKCQCIETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGIWGALQASRILLSGDLSERQALVEAEGISSDVSVCDKYLAKTAELLTSKCMTGDNVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQQLKLLSQWKNDFLVGVHVGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNTEIAVRTSSETHNIPVEKIFRVDSSGASVSAGYSVSLLHQYCSKLPHDEYFDPRPSFFYFDDSGGTVCQMTLPSNAPIHQIVSAPHLSMEASKRDACLKAIEELYKLGSLNDCLLPKQNDAEPEVLDSSDSDECEDDISRGELYEMLVPSAFGQSWKNAERTVCLNAYYIKFFPTPEDRVYKKFGLFIMTRLPMEAEKLELDLHLAHGRSVKTKFIPFGVVEFNKDEIKMAENFQEMFLKVILDRLEFVSKFVELSAESHTRTSTFYLLLPVILKEYAMNIDWKTVKRCLCSAIFRHPEDALDKKVTPLDNHLQLANGYRSVRDVENSLVYTSHTKAFFFVTNVIYEKNGFSPFKDSDTSSYMDHLHKKFSITLKHPEQPLLHAKPLFKLHNLLHNRRHGDAEPDELEEYFNYLPPELCELKIVGFSKDIGSSLSLLPSIMHRLGNLLVAIELKHHLYSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVGRHFFLLHDSLHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYALGRPCPIVCTEETEDSIHLCLNSGEEKRSVTRIRCNKNHHWLHRKTIADVVEALVGAFIVDSGFKAAFAFLTWIGIQVNFEASQVVNICNGSVGYFPLSAEIDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDEFLLCDSSALTQAIKQYADYIRRPISDSGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLQTSKKLAKTFLVEAKVIGDGVCEEVYVTSQNKKEASRIASQLLFSKLKAQDLKLKSKTLEDVMKSTFKTEPKLIGYDETPIDVSDASSLNVKPVVQRLQSSHKGKLSETIRNRDCVSDSSKTAKARLYELCQSYCWKGPSFECCKEEGPDHLKLFTCKATMKIEEAPDTVFEFIGEPLPKKKDATDSAAEGALWYLQKEGYLRNANGN | 1600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1514 | 1590 | IPR014720 | - | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | PAZ domain profile. | 866 | 966 | IPR003100 | GO:0005515 | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | RNase III domain-like | 1015 | 1176 | IPR036389 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | SMART | DRBM_3 | 1375 | 1440 | IPR014720 | - | |
| Vifaun6580g00001 | 1600 | SMART | DRBM_3 | 1515 | 1589 | IPR014720 | - | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | dsRNA-binding domain-like | 1329 | 1440 | - | - | |
| Vifaun6580g00001 | 1600 | SMART | PAZ_2_a_3 | 842 | 992 | IPR003100 | GO:0005515 | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Ribonuclease III family domain profile. | 1203 | 1347 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | PAZ domain | 862 | 964 | IPR036085 | GO:0005515 | |
| Vifaun6580g00001 | 1600 | Gene3D | Dicer dimerisation domain | 573 | 668 | IPR038248 | - | |
| Vifaun6580g00001 | 1600 | CDD | DSRM_DCL_plant | 1521 | 1590 | - | - | |
| Vifaun6580g00001 | 1600 | SMART | ultradead3 | 45 | 242 | IPR014001 | - | |
| Vifaun6580g00001 | 1600 | Pfam | DEAD/DEAH box helicase | 51 | 212 | IPR011545 | GO:0003676|GO:0005524 | |
| Vifaun6580g00001 | 1600 | Gene3D | - | 1521 | 1591 | - | - | |
| Vifaun6580g00001 | 1600 | Pfam | Helicase conserved C-terminal domain | 398 | 511 | IPR001650 | - | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 577 | 667 | IPR005034 | GO:0016891 | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 56 | 232 | IPR014001 | - | |
| Vifaun6580g00001 | 1600 | FunFam | Endoribonuclease dicer-like 1 | 572 | 668 | - | - | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | dsRNA-binding domain-like | 1512 | 1593 | - | - | |
| Vifaun6580g00001 | 1600 | Pfam | PAZ domain | 866 | 987 | IPR003100 | GO:0005515 | |
| Vifaun6580g00001 | 1600 | Pfam | double strand RNA binding domain from DEAD END PROTEIN 1 | 1514 | 1589 | - | - | |
| Vifaun6580g00001 | 1600 | Gene3D | Ribonuclease III domain | 1201 | 1374 | IPR036389 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 548 | IPR001650 | - | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 98 | 528 | IPR027417 | - | |
| Vifaun6580g00001 | 1600 | Gene3D | Ribonuclease III domain | 1011 | 1173 | IPR036389 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | Gene3D | - | 49 | 303 | IPR027417 | - | |
| Vifaun6580g00001 | 1600 | SMART | riboneu5 | 1218 | 1370 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | SMART | riboneu5 | 1015 | 1182 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | ProSitePatterns | Ribonuclease III family signature. | 1238 | 1246 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | FunFam | Endoribonuclease dicer-like protein | 44 | 283 | - | - | |
| Vifaun6580g00001 | 1600 | Pfam | Dicer dimerisation domain | 577 | 662 | - | - | |
| Vifaun6580g00001 | 1600 | Pfam | Ribonuclease III domain | 1238 | 1347 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | Pfam | Ribonuclease III domain | 1031 | 1162 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | CDD | RIBOc | 1016 | 1172 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | Gene3D | - | 386 | 547 | IPR027417 | - | |
| Vifaun6580g00001 | 1600 | FunFam | Endoribonuclease dicer-like 1 | 1197 | 1368 | - | - | |
| Vifaun6580g00001 | 1600 | CDD | RIBOc | 1219 | 1369 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | SMART | helicmild6 | 423 | 513 | IPR001650 | - | |
| Vifaun6580g00001 | 1600 | FunFam | Endoribonuclease dicer-like 1 | 384 | 547 | - | - | |
| Vifaun6580g00001 | 1600 | Gene3D | paz domain | 859 | 964 | - | - | |
| Vifaun6580g00001 | 1600 | SUPERFAMILY | RNase III domain-like | 1202 | 1366 | IPR036389 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | CDD | DEXHc_dicer | 47 | 246 | - | - | |
| Vifaun6580g00001 | 1600 | ProSiteProfiles | Ribonuclease III family domain profile. | 1017 | 1162 | IPR000999 | GO:0004525|GO:0006396 | |
| Vifaun6580g00001 | 1600 | PANTHER | DICER-RELATED | 63 | 1445 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifaun6580g00001 | 411 | 543 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.159 | 1.21e-07 | 54.3 |