Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6566g00001 ATGATGGCGGAATCATTTCAAGTAGCCACTTCTTCTCTATGCAATCTCAACGGTTCTCACCGGAGGCCAATTCCTGTTTCTCGCTTCATGCCTTCAGGAGCTGCTTTTCGCTCTCAACACTCCCTCTACTTGACTCGCTCTTCCTCTTCGCATTTCCTTGGAACTAATGTTAATTTCATCTCTTTCGCTTCACCACGAATGGGTCGAACAAGGAGAAACTTTTCAGTTTTCGCCATGTCCACTGAGGTTATAGATGGGAAACGCGCTGTCCCATTGAAGGACTATCGCAACATTGGCATCATGGCTCACATAGATGCAGGAAAGACAACTACAACCGAAAGAATTCTCTTCTATACAGGAAGAAACTACAAAATTGGAGAGGTGCACGAGGGAACAGCGACAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACAATTACTTCTGCTGCAACCACCACGTTTTGGGATAAGCACAGAATCAATATCATTGATACCCCAGGCCATGTTGACTTCACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAACCGCAATCCGAAACTGTTTGGAGGCAAGCTGATAGATACGGGGTTCCTCGGATTTGCTTTGTCAATAAAATGGACCGTCTTGGAGCCAATTTTTTTCGAACTAGAGATATGATTGTCACAAATCTAGGTGCTAAACCACTTGTACTTCAACTACCAATTGGAGCCGAGGATTCCTTTAAGGGAGTTATTGATATTGTTAGGATGAAAGCTATAGTTTGGGGTGGTGAAGAGCTTGGTGCCAAGTTTTCTTATGAAGATATACCTGAAGATCTCCTACAGCAGGCTCAGGATTACAGATCACAGATGATAGAAACCATAGTTGAGTTAGATGACGAGGTCATGGAGAACTATCTAGAAGGGGTTGAGCCAGATGAACAAACTATAAAAAGATTGATTAGAAAGGGATCCATAGCAGCCACTTTTGTGCCAGTGTTGTGTGGATCAGCTTTCAAAAACAAGGGAGTCCAACCGTTGCTAGATGCCGTAGTGGACTATCTACCATCGCCACTTGATGTACCACCATTGAAGGGCACTGACCCTGAAGACCCAGAAACAACAATAGAAAGGATAGCAAGCGATGATGAAGCATTTTCCGGACTGGCTTTTAAGATCATGAGTGATTCATTTGTAGGCTCCCTCACGTTTCTCAGAGTGTATTCTGGAAAGCTAACTGCAGGGTCTTATGTACTTAATTCAAACAAAGGGAAAAAGGAAAGAATTGGTAGACTTCTAGAAATGCATGCTAACAGCAGAGAAGACGTTAAAGTAGCTTTAACAGGAGATATTGTTGCTCTTGCTGGTTTAAAAGACACTATAACAGGTGAAACGTTGTGTGACCCTGAGAGTCCGGTCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAGATTGCAATTGAACCCAATACTAAAGCTGACATTGACAAGATGGCAGCTGGTTTAGTCAAGCTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGACGAAGAGTTAAATCAGACTATCATTGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTCGATCGCCTTAAAAGAGAATACAAGGTAGAAGCTAATGTTGGAGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCACAGAAGCGAGGTATGTGCACAAAAAACAATCAGGCGGACAAGGTCAGTTTGCAGATGTAACTGTACGGTTTGAACCCATGGAACCAGGTAGTGGATATGAATTCAAGAGTGAAATAAGAGGAGGTGCAGTTCCAAAAGAATACATTCCTGGTGTGGTTAAAGGATTGGAAGAGTGTATGAGCAATGGTGTTTTAGCCGGATTTCCAGTTGTTGATGTACGTGCAGTACTTGTGGATGGTACTTACCATGATGTGGATTCAAGTGTGTTGGCTTTCCAGTTGGCAGCAAGAGGAGCTTTTCGCGAAGGAATAAGAAAAGCCGGACCGAGAATGCTTGAACCTGTAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTGGTGACAAACCAGGTGGACTTAAGGTGGTTGATTCACTAGTACCTCTTGCTGAGATGTTTCAGTATGTCAGCACACTTAGAGGGATGACAAAGGGTCGTGCATCCTATACAATGCAATTAGCCATGTTTGATGTGGTACCTCAACACATTCAGAATCAACTTGCAACAAAAGTGCAAGAAGTTGCGGCTTAA 2349 0.433 MMAESFQVATSSLCNLNGSHRRPIPVSRFMPSGAAFRSQHSLYLTRSSSSHFLGTNVNFISFASPRMGRTRRNFSVFAMSTEVIDGKRAVPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQLPIGAEDSFKGVIDIVRMKAIVWGGEELGAKFSYEDIPEDLLQQAQDYRSQMIETIVELDDEVMENYLEGVEPDEQTIKRLIRKGSIAATFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPLKGTDPEDPETTIERIASDDEAFSGLAFKIMSDSFVGSLTFLRVYSGKLTAGSYVLNSNKGKKERIGRLLEMHANSREDVKVALTGDIVALAGLKDTITGETLCDPESPVVLERMDFPDPVIKIAIEPNTKADIDKMAAGLVKLAQEDPSFHFSRDEELNQTIIEGMGELHLEIIVDRLKREYKVEANVGAPQVNYRESISKITEARYVHKKQSGGQGQFADVTVRFEPMEPGSGYEFKSEIRGGAVPKEYIPGVVKGLEECMSNGVLAGFPVVDVRAVLVDGTYHDVDSSVLAFQLAARGAFREGIRKAGPRMLEPVMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKVQEVAA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6566g00001 782 Gene3D Translation factors 378 492 - -
Vifaun6566g00001 782 SUPERFAMILY EF-G C-terminal domain-like 688 777 IPR035647 -
Vifaun6566g00001 782 SUPERFAMILY Ribosomal protein S5 domain 2-like 564 684 IPR020568 -
Vifaun6566g00001 782 CDD EFG_mtEFG_C 688 766 IPR035649 -
Vifaun6566g00001 782 Gene3D - 87 377 IPR027417 -
Vifaun6566g00001 782 FunFam Elongation factor G 570 700 - -
Vifaun6566g00001 782 Gene3D Elongation Factor G (Translational Gtpase), domain 3 493 569 - -
Vifaun6566g00001 782 Hamap Elongation factor G, chloroplastic. 85 782 IPR030848 GO:0003746|GO:0006414|GO:0009507
Vifaun6566g00001 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 366 IPR027417 -
Vifaun6566g00001 782 SUPERFAMILY Translation proteins 349 489 IPR009000 -
Vifaun6566g00001 782 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 136 151 IPR031157 -
Vifaun6566g00001 782 FunFam Elongation factor G 86 377 - -
Vifaun6566g00001 782 Pfam Elongation Factor G, domain III 489 562 IPR041095 -
Vifaun6566g00001 782 CDD EFG_mtEFG1_IV 568 683 IPR005517 GO:0005525
Vifaun6566g00001 782 Pfam Elongation factor G, domain IV 564 682 IPR005517 GO:0005525
Vifaun6566g00001 782 Hamap Elongation factor G [fusA]. 91 777 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vifaun6566g00001 782 Pfam Elongation factor G C-terminus 686 772 IPR000640 -
Vifaun6566g00001 782 PRINTS GTP-binding elongation factor signature 215 224 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 PRINTS GTP-binding elongation factor signature 143 151 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 PRINTS GTP-binding elongation factor signature 179 190 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 PRINTS GTP-binding elongation factor signature 163 173 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 PRINTS GTP-binding elongation factor signature 97 110 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 Gene3D - 570 773 IPR014721 -
Vifaun6566g00001 782 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 71 778 - -
Vifaun6566g00001 782 FunFam Elongation factor G 493 569 - -
Vifaun6566g00001 782 NCBIfam small GTP-binding protein domain 95 265 IPR005225 GO:0005525
Vifaun6566g00001 782 CDD EFG_mtEFG_II 395 477 - -
Vifaun6566g00001 782 Pfam Elongation factor Tu GTP binding domain 94 366 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 FunFam Elongation factor G 689 760 - -
Vifaun6566g00001 782 Gene3D - 689 760 - -
Vifaun6566g00001 782 CDD EF-G 97 367 - -
Vifaun6566g00001 782 SMART EFG_IV_2 565 683 IPR005517 GO:0005525
Vifaun6566g00001 782 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 93 368 IPR000795 GO:0003924|GO:0005525
Vifaun6566g00001 782 CDD EFG_III 490 565 IPR009022 -
Vifaun6566g00001 782 FunFam Elongation factor G 377 492 - -
Vifaun6566g00001 782 SMART EFG_C_a 685 773 IPR000640 -
Vifaun6566g00001 782 SUPERFAMILY EF-G C-terminal domain-like 489 566 IPR035647 -
Vifaun6566g00001 782 Pfam Elongation factor Tu domain 2 409 476 IPR004161 GO:0005525
Vifaun6566g00001 782 NCBIfam elongation factor G 88 776 IPR004540 GO:0003746|GO:0005525|GO:0006414
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6566g00001 94 753 Eukaryotic Initiation Factors Gene Family AT1G56070 24.533 8.12e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6566g00001 K02355 - gmx:102663021 1342.79