LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun6480g00001	ATGGAACTAGCTTTGAGCTTAGGCGACACACCAAAACCATTCTCTTTCTTTCAAAAATCCTCAGACCAAAAAACCACTTCCTCAGATCCACTTATCCAACTCAACCTTCTTACTTCAACACCAGTTCTTCTTACTCATCCTTCTCCAAATCTTCGGATTCCATGGCTCAATCATGCACTCGGAGTTGAACCGGCGAGGATGTCGGATGTAAACCGATTCCGGCTGGCCGCGTCGGTCGAAGATACTACCGACGAAGGAGCTGCGGTTTCATCCCCGAATAGCGCGGTTTCATCTTTTCAGATGGATTTCTATATCATGAACCGTAACGGAAATGCTGCTGAGGGTGCAGAAAGAAATAATAGTCGTGAGAGGGGTGCAGATAGCGATGATGAAGAAAATGGTTCCACCAGGAAGAAACTCAGACTCACTAAAGAACAATCAGCTTTCCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCTAAACAGAAACATGCTCTTGCAAAACAGTTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAATGGAAGTGGATTGTGAGTATTTGAAAAAATGTTGTAAGACATTAACAGAAGAGAATAGAAGATTAGAAAAGGAAGTGCAAGAGTTAAGAGCTTTGAAAACTTCTCAGCCATTCTACATGCAGCGTCCAGCTACCACTCTCACTATGTGTCCATCTTGTGAAAGGGTTGCAACCAACACCACCGGGACCACCGCCGCAGCAAAACAAACCGCCTCGATCGCCACTGGAGGTCTCTGCGAGCAATAA	828	0.4432	MELALSLGDTPKPFSFFQKSSDQKTTSSDPLIQLNLLTSTPVLLTHPSPNLRIPWLNHALGVEPARMSDVNRFRLAASVEDTTDEGAAVSSPNSAVSSFQMDFYIMNRNGNAAEGAERNNSRERGADSDDEENGSTRKKLRLTKEQSAFLEDSFKEHTTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQMEVDCEYLKKCCKTLTEENRRLEKEVQELRALKTSQPFYMQRPATTLTMCPSCERVATNTTGTTAAAKQTASIATGGLCEQ	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun6480g00001	275	SMART	halz	193	236	IPR003106	GO:0006355\|GO:0043565
	Vifaun6480g00001	275	FunFam	Homeobox-leucine zipper protein 18	121	198	-	-
	Vifaun6480g00001	275	ProSitePatterns	'Homeobox' domain signature.	168	191	IPR017970	GO:0000981\|GO:0006355
	Vifaun6480g00001	275	Pfam	Homeodomain	137	191	IPR001356	GO:0003677
	Vifaun6480g00001	275	ProSiteProfiles	'Homeobox' domain profile.	133	193	IPR001356	GO:0003677
	Vifaun6480g00001	275	SMART	HOX_1	135	197	IPR001356	GO:0003677
	Vifaun6480g00001	275	SUPERFAMILY	Homeodomain-like	134	202	IPR009057	-
	Vifaun6480g00001	275	Pfam	Homeobox associated leucine zipper	193	227	IPR003106	GO:0006355\|GO:0043565
	Vifaun6480g00001	275	Coils	Coil	199	229	-	-
	Vifaun6480g00001	275	CDD	homeodomain	137	194	IPR001356	GO:0003677
	Vifaun6480g00001	275	MobiDBLite	consensus disorder prediction	112	142	-	-
	Vifaun6480g00001	275	Pfam	HD-ZIP protein N terminus	66	99	IPR006712	GO:0005634
	Vifaun6480g00001	275	MobiDBLite	consensus disorder prediction	117	142	-	-
	Vifaun6480g00001	275	Gene3D	-	129	198	-	-
	Vifaun6480g00001	275	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	21	264	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun6480g00001	127	268	Homeobox Transcription Factor Family	AT4G37790	73.611	2.13e-70	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Vifaun6480g00001		Homeodomain	5.7e-16	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun6480g00001	K09338		-	qsu:112028347	326.635